rwdd3 (rwdd3)


Basic Information

Item Value
gene id rwdd3
gene name rwdd3
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 6408846 ~ 6414794 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU2554
tcagaaagtgaggaaatgtcctggtttgtaaattaccttcattggaccagagagcagtagacagcgtGACTGTCAGCGTGGAGCCCTCCCTCTCCCCCTTCCGGTGCAGTCTCAcagtaagagcacacacacaacgctCCACCCCAcaaaccacccccccccccaccaggtgtcctggtttacccaaatgaaaatatggtcaccctaaCATACCACCAATGACATGTAAGCCACACACCTTCATATCGTCATATGTTTTACCAATTGTCCTTCACCTGTTGTGTGGAGCTTAGCCACTTTTGCAGTCCATAAGTTATTAtggtaaatttgattaatatttatGGTTAATACAATGTTCCTACTGAGAATCTAAAAAGGATTtagacagacaaaaaaacaagagtgCCAAGCAGTGAATTACAGTGTTTTCTACATTATTTAGCTATTATTTGAAACGCAGAAACTGTAGTGAACCGTTTGTGACTGTTGGTTGATATGAGCATATCTTGTGGCGTTTCACAGGGTTTTAATCTAGGGCCAttgaaactgatgttaatagAAGTGCTGAAGTGTAGTTTACACACAGATTCTAACAGGTAAATCACTAAACACTATCATATGTAATGTTAGGAAAAAATGCAGGTGGAAACTTTATAGTTTTcagtctttaatattttaatgtactgtactgtaaagtgGCAGATTATAAATCACTATAATCTGAACGTCTATTTTGTGGTCtactttcatacataagatgcaccagtttataaggcgcattatgcgacgctagtaaggaacaggggtgttgccatgttttccttctaattcagcaggtcttgccactgggtggtggtggggccatttctttaaaaggcaaacgagtgctggatgttaatctgaaCAGATTTCTTTGCCGAAAActgttatttgggtgagtaaagcgcttctgtttatttccaAGAAGCTTAGAAGCTGAGGAAcggttaatgctgctccagctaaaaactgaactgaaaactaaactgaatctcctgtataatgctgtacttcagcggagtggttttactgctccttaatacctgactggtaaaattcatacccAAGGCACACCGGATAATGAGGCACACTGgcaattttttgggaaaattaaaggattttatgttaccaaaaaatacagtaagcagattttttttctgaggtcATCTAGTGTACCACCGTGGAATGCTTTGAGCACCACCAGTCTTACCtttaccacagtttgagaatcACTGCCACAGAAGTACCAATGCTGGTTtcataaaaaacatacaatttttgtaaaaaggcatttggaaaaaaaaaaaaaacaaacaagctaaATTTGAATTGTGTGTtaagggacattccaggattttggaaA
>XM_007238862.3
AAACACACgtgtttagtgtttgtttttctatcTGAGCTGAGACTGATCCTGAGACTCTAAACCCGGGCTGATCTaaactctatctctctctctctgctgtgatGAGCGAGGAGGTTTTAGACGAGCTGGCGGTTCTGTCTGCGATTTACTGCGGGGAGGAGGAGTTCCAGGTGGTGGGAGAGTCTGcTGAAACGGGCCTGGTTTACCGCATTAACACAGTGGTGGAAAGTGAGGAGAAGAAAACACCACTGAGTCTGGTCTTCCAACTCTCTCCTGAATACCCACACACACCTCCAGACGTGAGCATTAGCTCCAACCAGCTCTCGAGGAAGCAGTGCCAGGAGCTGAGGGATGGGTTACTGAACAAAGCATGCAGTCTCCAGCCCAGGCCCATGGTCCACGAGCTGGTCCTGTGGCTCCAGCAGAACTTCTCTGACCTTCTGACAACATCAGCACCCAACACACTGAAGGCCCAGAGCACAGCAGATGGGTCAGCAGAGGGAATGTGGACAGCGCTGCTTCATTTAGATCACATGAGATCCAAAACTAAATACATCAGACTGATTGAAAAGTGGACGTCAGAGTTGGGACTGACTGGGAGACTCTTGATGGGGAAGGCTATTTTCATTCTGCTGCAGGGGGAGAGGAAGAGCATTAAGGAATATATCCACCTCCAGAGGACAGTAAAGGTTGATGTGGACTCATCAGGAAAACGGTGCAAAGAGAAGATGATGAGCGTTTTATGTGAAATTCCTCTTTCAGAcgattttaaaaaGATATCAACTTTTGAAGTTAGAGACCCTTTATCTTCAGAGGAACTTAAAAAGGAGTTTGAAGAAgttggatctttgaagctccaCCAAGAGTTTGTCTCCTCGTTACTGTAAATGTACTCAAACTTTATTTATTCGTCGTTGACTGATCAATCGGTTTCAGTTTGCAGGGGAGCGGTCATCAGGCGGAAGGCAGCATACATCCTGGACAGGCTGCTAATTCATCACAGGGACTCTTAAACTGCTCTCCTAAAAACAAAAGGGCCACAAAAGTATCTTTTAGAGATGTCATAGAACAGTGGTTCTCAAAACCTTTTAGACCACATACCATAGGGTGACCAAATgtccgtatttcccgggacatgtccgtatttccCGTCCTGTCCCGGGCTTCCcggggtttttttttcagaaagtgaggaaatgtcctggtttgtaaattaccttcattggaccagagagcagtagacagcgtGACTGTCAGCGTGGAGCCCTCCCTCTCCCCCTTCCGGTGCAGTCTCAcagtaagagcacacacacaacgctCCACCCCAcaaaccacccccccccccaccaggtgtcctggtttacccaaatgaaaatatggtcaccctaaCATACCACCAATGACATGTAAGCCACACACCTTCATATCGTCATATGTTTTACCAATTGTCCTTCACCTGTTGTGTGGAGCTTAGCCACTTTTGCAGTCCATAAGTTATTAtggtaaatttgattaatatttatGGTTAATACAATGTTCCTACTGAGAATCTAAAAAGGATTtagacagacaaaaaaacaagagtgCCAAGCAGTGAATTACAGTGTTTTCTACATTATTTAGCTATTATTTGAAACGCAGAAACTGTAGTGAACCGTTTGTGACTGTTGGTTGATATGAGCATATCTTGTGGCGTTTCACAGGGTTTTAATCTAGGGCCAttgaaactgatgttaatagAAGTGCTGAAGTGTAGTTTACACACAGATTCTAACAGGTAAATCACTAAACACTATCATATGTAATGTTAGGAAAAAATGCAGGTGGAAACTTTATAGTTTTcagtctttaatattttaatgtactgtactgtaaagtgGCAGATTATAAATCACTATAATCTGAACGTCTATTTTGTGGTCtactttcatacataagatgcaccagtttataaggcgcattatgcgacgctagtaaggaacaggggtgttgccatgttttccttctaattcagcaggtcttgccactgggtggtggtggggccatttctttaaaaggcaaacgagtgctggatgttaatctgaaCAGATTTCTTTGCCGAAAActgttatttgggtgagtaaagcgcttctgtttatttccaAGAAGCTTAGAAGCTGAGGAAcggttaatgctgctccagctaaaaactgaactgaaaactaaactgaatctcctgtataatgctgtacttcagcggagtggttttactgctccttaatacctgactggtaaaattcatacccAAGGCACACCGGATAATGAGGCACACTGgcaattttttgggaaaattaaaggattttatgttaccaaaaaatacagtaagcagattttttttctgaggtcATCTAGTGTACCACCGTGGAATGCTTTGAGCACCACCAGTCTTACCtttaccacagtttgagaatcACTGCCACAGAAGTACCAATGCTGGTTtcataaaaaacatacaatttttgtaaaaaggcatttg

Function

symbol description
rwdd3 Predicted to be involved in positive regulation of protein sumoylation. Predicted to act upstream of or within negative regulation of NF-kappaB transcription factor activity and positive regulation of hypoxia-inducible factor-1alpha signaling pathway. Predicted to be located in cytoplasm and nucleus. Is expressed in nervous system and pancreatic system. Orthologous to human RWDD3 (RWD domain containing 3).

NR:

description
TC1-like transposase

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2554 False 1402 lncRNA 0.44 1 6413393 6414794
XM_007238862.3 True 2515 mRNA 0.43 4 6408846 6414726

Neighbor

gene id symbol gene type direction distance location
LOC103031157 LOC108442282,LOC107594665,LOC107710606,LOC107700523 coding upstream 2864 6381786 ~ 6405982 (+)
LOC111194277 NA coding upstream 80935 6317305 ~ 6327911 (+)
LOC103031751 NA coding upstream 752791 5631396 ~ 5656055 (+)
LOC103026943 LOC103026943,LOC108278393 coding upstream 790010 5613743 ~ 5618836 (+)
LOC103027419 dpf1,LOC107672425,LOC107561370,LOC107749650 coding upstream 813351 5501219 ~ 5595495 (+)
LOC103037029 NA coding downstream 532029 6946823 ~ 6961558 (+)
LOC103041009 NA coding downstream 600514 7015308 ~ 7020982 (+)
LOC111194639 NA coding downstream 747452 7162246 ~ 7167800 (+)
LOC103039155 NA coding downstream 766988 7181782 ~ 7188573 (+)
LOC103038844 NA coding downstream 774686 7189480 ~ 7202566 (+)
G1902 NA non-coding upstream 57834 6350511 ~ 6351012 (+)
G1897 NA non-coding upstream 74766 6333189 ~ 6334080 (+)
G1873 NA non-coding upstream 480149 5928157 ~ 5928697 (+)
G1837 NA non-coding upstream 622789 5785826 ~ 5786057 (+)
G1702 NA non-coding upstream 966706 5439217 ~ 5442140 (+)
G1916 NA non-coding downstream 2529 6417323 ~ 6417565 (+)
G1941 NA non-coding downstream 74569 6489363 ~ 6517105 (+)
G1942 NA non-coding downstream 119667 6534461 ~ 6537245 (+)
G1945 NA non-coding downstream 143602 6558396 ~ 6565619 (+)
G1947 NA non-coding downstream 203558 6618352 ~ 6618666 (+)
pnkp pnkp,LOC107749649,LOC107672387,LOC107561379,LOC107758514 other upstream 705663 5681026 ~ 5703183 (+)
LOC111192942 NA other upstream 1131858 5250484 ~ 5276988 (+)
LOC103026740 NA other upstream 1164659 5171375 ~ 5244187 (+)
G1127 LOC107669897,LOC107733923,LOC107558818 other upstream 2422118 3981824 ~ 3986728 (+)
kcne4 NA other upstream 2612298 3794819 ~ 3796548 (+)
LOC103030091 ptbp2,ptbp2b,LOC103030091,LOC108442283,LOC107594658,LOC107718150,LOC107570490,LOC108277987 other downstream 98350 6513144 ~ 6554450 (+)
G2304 NA other downstream 2145272 8560066 ~ 8560478 (+)
G2358 LOC108432992,LOC101077340,LOC100691215,LOC101465674 other downstream 2317929 8732723 ~ 8734952 (+)
lyrm9 lyrm9,LOC102789908 other downstream 2529667 8944461 ~ 8957392 (+)
G2509 NA other downstream 3217071 9631865 ~ 9670125 (+)

Expression


Co-expression Network