G1916


Basic Information

Item Value
gene id G1916
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 6417323 ~ 6417565 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU2555
ttttagactcttttgcccgtttttctgcgctagaaatgcgcactctctccgcttttagactctttggcccgtttctgacacctagcgttcaaactttgaatctcacattataaaaacctgcttaacagcgggccaactttcattatatttctaaaatacctcgcgggccgcttcaaaaaaaggaaacgggtcgcaaatggcccgcgggccgtagtttggacacccctggcttaCAGTTTATGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2555 True 243 lncRNA 0.39 1 6417323 6417565

Neighbor

gene id symbol gene type direction distance location
LOC103031157 LOC108442282,LOC107594665,LOC107710606,LOC107700523 coding upstream 11341 6381786 ~ 6405982 (+)
LOC111194277 NA coding upstream 89412 6317305 ~ 6327911 (+)
LOC103031751 NA coding upstream 761268 5631396 ~ 5656055 (+)
LOC103026943 LOC103026943,LOC108278393 coding upstream 798487 5613743 ~ 5618836 (+)
LOC103027419 dpf1,LOC107672425,LOC107561370,LOC107749650 coding upstream 821828 5501219 ~ 5595495 (+)
LOC103037029 NA coding downstream 529258 6946823 ~ 6961558 (+)
LOC103041009 NA coding downstream 597743 7015308 ~ 7020982 (+)
LOC111194639 NA coding downstream 744681 7162246 ~ 7167800 (+)
LOC103039155 NA coding downstream 764217 7181782 ~ 7188573 (+)
LOC103038844 NA coding downstream 771915 7189480 ~ 7202566 (+)
G1902 NA non-coding upstream 66311 6350511 ~ 6351012 (+)
G1897 NA non-coding upstream 83243 6333189 ~ 6334080 (+)
G1873 NA non-coding upstream 488626 5928157 ~ 5928697 (+)
G1837 NA non-coding upstream 631266 5785826 ~ 5786057 (+)
G1702 NA non-coding upstream 975183 5439217 ~ 5442140 (+)
G1941 NA non-coding downstream 71798 6489363 ~ 6517105 (+)
G1942 NA non-coding downstream 116896 6534461 ~ 6537245 (+)
G1945 NA non-coding downstream 140831 6558396 ~ 6565619 (+)
G1947 NA non-coding downstream 200787 6618352 ~ 6618666 (+)
G1963 NA non-coding downstream 252008 6669573 ~ 6669802 (+)
rwdd3 rwdd3 other upstream 2529 6408846 ~ 6414794 (+)
pnkp pnkp,LOC107749649,LOC107672387,LOC107561379,LOC107758514 other upstream 714140 5681026 ~ 5703183 (+)
LOC111192942 NA other upstream 1140335 5250484 ~ 5276988 (+)
LOC103026740 NA other upstream 1173136 5171375 ~ 5244187 (+)
G1127 LOC107669897,LOC107733923,LOC107558818 other upstream 2430595 3981824 ~ 3986728 (+)
LOC103030091 ptbp2,ptbp2b,LOC103030091,LOC108442283,LOC107594658,LOC107718150,LOC107570490,LOC108277987 other downstream 95579 6513144 ~ 6554450 (+)
G2304 NA other downstream 2142501 8560066 ~ 8560478 (+)
G2358 LOC108432992,LOC101077340,LOC100691215,LOC101465674 other downstream 2315158 8732723 ~ 8734952 (+)
lyrm9 lyrm9,LOC102789908 other downstream 2526896 8944461 ~ 8957392 (+)
G2509 NA other downstream 3214300 9631865 ~ 9670125 (+)

Expression


Co-expression Network