G1941


Basic Information

Item Value
gene id G1941
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 6489363 ~ 6517105 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU2600
tttctattttctttctACTTTACTCCTATCCTGCACTGTCCAGAGTTCTGCCAGCCAATGGGAGACATGCTGAGGATCAGCTGACCAGATCCACCAATGGGAGGAGTGGCTCACCAGGAAGGGGTGGTGCTTCCTGTTTAAATACCTCCACGTGTGGACTAATGGAGGAGgcttttgtgtttgtgagaggCTTTtgtgtttgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2600 True 204 lncRNA 0.51 2 6489363 6517105

Neighbor

gene id symbol gene type direction distance location
LOC103031157 LOC108442282,LOC107594665,LOC107710606,LOC107700523 coding upstream 83381 6381786 ~ 6405982 (+)
LOC111194277 NA coding upstream 161452 6317305 ~ 6327911 (+)
LOC103031751 NA coding upstream 833308 5631396 ~ 5656055 (+)
LOC103026943 LOC103026943,LOC108278393 coding upstream 870527 5613743 ~ 5618836 (+)
LOC103027419 dpf1,LOC107672425,LOC107561370,LOC107749650 coding upstream 893868 5501219 ~ 5595495 (+)
LOC103037029 NA coding downstream 429718 6946823 ~ 6961558 (+)
LOC103041009 NA coding downstream 498203 7015308 ~ 7020982 (+)
LOC111194639 NA coding downstream 645141 7162246 ~ 7167800 (+)
LOC103039155 NA coding downstream 664677 7181782 ~ 7188573 (+)
LOC103038844 NA coding downstream 672375 7189480 ~ 7202566 (+)
G1916 NA non-coding upstream 71798 6417323 ~ 6417565 (+)
G1902 NA non-coding upstream 138351 6350511 ~ 6351012 (+)
G1897 NA non-coding upstream 155283 6333189 ~ 6334080 (+)
G1873 NA non-coding upstream 560666 5928157 ~ 5928697 (+)
G1837 NA non-coding upstream 703306 5785826 ~ 5786057 (+)
G1942 NA non-coding downstream 17356 6534461 ~ 6537245 (+)
G1945 NA non-coding downstream 41291 6558396 ~ 6565619 (+)
G1947 NA non-coding downstream 101247 6618352 ~ 6618666 (+)
G1963 NA non-coding downstream 152468 6669573 ~ 6669802 (+)
G1962 NA non-coding downstream 184995 6702100 ~ 6706375 (+)
rwdd3 rwdd3 other upstream 74569 6408846 ~ 6414794 (+)
pnkp pnkp,LOC107749649,LOC107672387,LOC107561379,LOC107758514 other upstream 786180 5681026 ~ 5703183 (+)
LOC111192942 NA other upstream 1212375 5250484 ~ 5276988 (+)
LOC103026740 NA other upstream 1245176 5171375 ~ 5244187 (+)
G1127 LOC107669897,LOC107733923,LOC107558818 other upstream 2502635 3981824 ~ 3986728 (+)
G2304 NA other downstream 2042961 8560066 ~ 8560478 (+)
G2358 LOC108432992,LOC101077340,LOC100691215,LOC101465674 other downstream 2215618 8732723 ~ 8734952 (+)
lyrm9 lyrm9,LOC102789908 other downstream 2427356 8944461 ~ 8957392 (+)
G2509 NA other downstream 3114760 9631865 ~ 9670125 (+)
LOC103039705 gdpd5b,gdpd5,LOC103039705,LOC108433002,LOC108277648,LOC107666190,LOC107682503 other downstream 3116988 9634093 ~ 9743491 (+)

Expression


Co-expression Network