G1947


Basic Information

Item Value
gene id G1947
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 6618352 ~ 6618666 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU2606
ctggtggttaatcttcattaattgcacattgcaccagtaagagcagagtgtgaaggttcaattagcaggataagagcacagttctgctcaaaatattgcaatgcacacaacattatgggtgatgtaccagagttcaaaagaggacaaattgttggtgcacgtcttgctggagcatctgtgaccaagacagcaagtctttgtgatgtatcaagagtcacggtatccagggtaatgtcagcataccaccaagaaggaccaaccacatccaacaggattaactgtggacgctgtaagaggaagctgtctgaaagggat

Function

NR:

description
uncharacterized protein LOC110513485

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2606 True 315 lncRNA 0.41 1 6618352 6618666

Neighbor

gene id symbol gene type direction distance location
LOC103031157 LOC108442282,LOC107594665,LOC107710606,LOC107700523 coding upstream 212370 6381786 ~ 6405982 (+)
LOC111194277 NA coding upstream 290441 6317305 ~ 6327911 (+)
LOC103031751 NA coding upstream 962297 5631396 ~ 5656055 (+)
LOC103026943 LOC103026943,LOC108278393 coding upstream 999516 5613743 ~ 5618836 (+)
LOC103027419 dpf1,LOC107672425,LOC107561370,LOC107749650 coding upstream 1022857 5501219 ~ 5595495 (+)
LOC103037029 NA coding downstream 328157 6946823 ~ 6961558 (+)
LOC103041009 NA coding downstream 396642 7015308 ~ 7020982 (+)
LOC111194639 NA coding downstream 543580 7162246 ~ 7167800 (+)
LOC103039155 NA coding downstream 563116 7181782 ~ 7188573 (+)
LOC103038844 NA coding downstream 570814 7189480 ~ 7202566 (+)
G1945 NA non-coding upstream 52733 6558396 ~ 6565619 (+)
G1942 NA non-coding upstream 81107 6534461 ~ 6537245 (+)
G1941 NA non-coding upstream 101247 6489363 ~ 6517105 (+)
G1916 NA non-coding upstream 200787 6417323 ~ 6417565 (+)
G1902 NA non-coding upstream 267340 6350511 ~ 6351012 (+)
G1963 NA non-coding downstream 50907 6669573 ~ 6669802 (+)
G1962 NA non-coding downstream 83434 6702100 ~ 6706375 (+)
G1975 NA non-coding downstream 214270 6832936 ~ 6833305 (+)
G1980 NA non-coding downstream 261885 6880551 ~ 6882339 (+)
G2025 NA non-coding downstream 512541 7131207 ~ 7133196 (+)
LOC103030091 ptbp2,ptbp2b,LOC103030091,LOC108442283,LOC107594658,LOC107718150,LOC107570490,LOC108277987 other upstream 63902 6513144 ~ 6554450 (+)
rwdd3 rwdd3 other upstream 203558 6408846 ~ 6414794 (+)
pnkp pnkp,LOC107749649,LOC107672387,LOC107561379,LOC107758514 other upstream 915169 5681026 ~ 5703183 (+)
LOC111192942 NA other upstream 1341364 5250484 ~ 5276988 (+)
LOC103026740 NA other upstream 1374165 5171375 ~ 5244187 (+)
G2304 NA other downstream 1941400 8560066 ~ 8560478 (+)
G2358 LOC108432992,LOC101077340,LOC100691215,LOC101465674 other downstream 2114057 8732723 ~ 8734952 (+)
lyrm9 lyrm9,LOC102789908 other downstream 2325795 8944461 ~ 8957392 (+)
G2509 NA other downstream 3013199 9631865 ~ 9670125 (+)
LOC103039705 gdpd5b,gdpd5,LOC103039705,LOC108433002,LOC108277648,LOC107666190,LOC107682503 other downstream 3015427 9634093 ~ 9743491 (+)

Expression


Co-expression Network