G2047


Basic Information

Item Value
gene id G2047
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 7206347 ~ 7206678 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU2729
caaatacaaaacaggaaGCAATTAAAAGCATACAATACACAAAacgattaaaacatttatatagttaaagaaaatcattacctttttaaaagtatCGAATCAATAGCTTTATTAATACCTGCTATTTTCCTTAggtgtgttttataaaaaaaaaaacctctaaaCTAGAgtatagagctgggcgatatggccgaaaaaaaaaatcttagatttttttttttttaaatccaattttcgatttaaatcgattttttccccctactaaaaatcaaactaaagattataaagaaatggttaaaaactagttcttatttaatttgttttcacttaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2729 True 332 lncRNA 0.27 1 7206347 7206678

Neighbor

gene id symbol gene type direction distance location
LOC103038844 NA coding upstream 3781 7189480 ~ 7202566 (+)
LOC103039155 NA coding upstream 17774 7181782 ~ 7188573 (+)
LOC111194639 NA coding upstream 38547 7162246 ~ 7167800 (+)
LOC103041009 NA coding upstream 185365 7015308 ~ 7020982 (+)
LOC103037029 NA coding upstream 244789 6946823 ~ 6961558 (+)
LOC111192949 NA coding downstream 64187 7270865 ~ 7273307 (+)
LOC103026472 LOC108432989,LOC108277724 coding downstream 110335 7317013 ~ 7779860 (+)
LOC111192950 LOC108432968 coding downstream 1469984 8676662 ~ 8697582 (+)
LOC103023232 NA coding downstream 1600489 8807167 ~ 8816687 (+)
LOC103027547 NA coding downstream 1604570 8811248 ~ 8813220 (+)
G2032 NA non-coding upstream 7432 7147760 ~ 7198915 (+)
G2039 dhx16,LOC107704755 non-coding upstream 28523 7176583 ~ 7177824 (+)
G2025 NA non-coding upstream 73151 7131207 ~ 7133196 (+)
G1980 NA non-coding upstream 324008 6880551 ~ 6882339 (+)
G1975 NA non-coding upstream 373042 6832936 ~ 6833305 (+)
G2124 NA non-coding downstream 416133 7622811 ~ 7623261 (+)
G2125 NA non-coding downstream 501519 7708197 ~ 7745912 (+)
G2174 NA non-coding downstream 671055 7877733 ~ 7879526 (+)
G2326 NA non-coding downstream 1420970 8627648 ~ 8627911 (+)
G2328 NA non-coding downstream 1423119 8629797 ~ 8630847 (+)
LOC103030091 ptbp2,ptbp2b,LOC103030091,LOC108442283,LOC107594658,LOC107718150,LOC107570490,LOC108277987 other upstream 651897 6513144 ~ 6554450 (+)
rwdd3 rwdd3 other upstream 791553 6408846 ~ 6414794 (+)
pnkp pnkp,LOC107749649,LOC107672387,LOC107561379,LOC107758514 other upstream 1503164 5681026 ~ 5703183 (+)
LOC111192942 NA other upstream 1929359 5250484 ~ 5276988 (+)
LOC103026740 NA other upstream 1962160 5171375 ~ 5244187 (+)
G2304 NA other downstream 1353388 8560066 ~ 8560478 (+)
G2358 LOC108432992,LOC101077340,LOC100691215,LOC101465674 other downstream 1526045 8732723 ~ 8734952 (+)
lyrm9 lyrm9,LOC102789908 other downstream 1737783 8944461 ~ 8957392 (+)
G2509 NA other downstream 2425187 9631865 ~ 9670125 (+)
LOC103039705 gdpd5b,gdpd5,LOC103039705,LOC108433002,LOC108277648,LOC107666190,LOC107682503 other downstream 2427415 9634093 ~ 9743491 (+)

Expression


Co-expression Network