G2174


Basic Information

Item Value
gene id G2174
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 7877733 ~ 7879526 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU2893
aaattgaaaacctctggaatatgatcaagagtaagatgaatgatcacaagccatcaaaccaaactgaactgcttgaatctttgcaccaggagtaaaggcataaagttatccaaaagcagtgtgtaagactggtggaggagaacatgccaagatgcatgaaataaaaactgtgattaaaaaccagggttattccaccaaatattgatttctgaactcttaaaacgttatgaatatgaacttgttttctttgcattatttgaggtctgaaagctctgcatcttttttgttatttcagccatttctcattttctgcaaataaatgctctaaatgacaatatttttattttgaatttggga

Function

NR:

description
PREDICTED: calcium uptake protein 3, mitochondrial-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2893 True 357 lncRNA 0.36 2 7877733 7879526

Neighbor

gene id symbol gene type direction distance location
LOC103026472 LOC108432989,LOC108277724 coding upstream 97873 7317013 ~ 7779860 (+)
LOC111192949 NA coding upstream 604426 7270865 ~ 7273307 (+)
LOC103038844 NA coding upstream 675167 7189480 ~ 7202566 (+)
LOC103039155 NA coding upstream 689160 7181782 ~ 7188573 (+)
LOC111194639 NA coding upstream 709933 7162246 ~ 7167800 (+)
LOC111192950 LOC108432968 coding downstream 797136 8676662 ~ 8697582 (+)
LOC103023232 NA coding downstream 927641 8807167 ~ 8816687 (+)
LOC103027547 NA coding downstream 931722 8811248 ~ 8813220 (+)
LOC111194918 NA coding downstream 942964 8822490 ~ 8826360 (+)
LOC103022922 LOC103022922,LOC108277434 coding downstream 957846 8837372 ~ 8839379 (+)
G2125 NA non-coding upstream 131821 7708197 ~ 7745912 (+)
G2124 NA non-coding upstream 254472 7622811 ~ 7623261 (+)
G2047 NA non-coding upstream 671055 7206347 ~ 7206678 (+)
G2032 NA non-coding upstream 678818 7147760 ~ 7198915 (+)
G2039 dhx16,LOC107704755 non-coding upstream 699909 7176583 ~ 7177824 (+)
G2326 NA non-coding downstream 748122 8627648 ~ 8627911 (+)
G2328 NA non-coding downstream 750271 8629797 ~ 8630847 (+)
G2362 stim1,LOC108277929,LOC108432992,LOC101465674,LOC100691215,LOC102214188 non-coding downstream 863490 8743016 ~ 8787010 (+)
G2393 NA non-coding downstream 977827 8857353 ~ 8862747 (+)
G2400 nos2,LOC108432969 non-coding downstream 996326 8875852 ~ 8882592 (+)
LOC103030091 ptbp2,ptbp2b,LOC103030091,LOC108442283,LOC107594658,LOC107718150,LOC107570490,LOC108277987 other upstream 1323283 6513144 ~ 6554450 (+)
rwdd3 rwdd3 other upstream 1462939 6408846 ~ 6414794 (+)
pnkp pnkp,LOC107749649,LOC107672387,LOC107561379,LOC107758514 other upstream 2174550 5681026 ~ 5703183 (+)
LOC111192942 NA other upstream 2600745 5250484 ~ 5276988 (+)
LOC103026740 NA other upstream 2633546 5171375 ~ 5244187 (+)
G2304 NA other downstream 680540 8560066 ~ 8560478 (+)
G2358 LOC108432992,LOC101077340,LOC100691215,LOC101465674 other downstream 853197 8732723 ~ 8734952 (+)
lyrm9 lyrm9,LOC102789908 other downstream 1064935 8944461 ~ 8957392 (+)
G2509 NA other downstream 1752339 9631865 ~ 9670125 (+)
LOC103039705 gdpd5b,gdpd5,LOC103039705,LOC108433002,LOC108277648,LOC107666190,LOC107682503 other downstream 1754567 9634093 ~ 9743491 (+)

Expression


Co-expression Network