G2328


Basic Information

Item Value
gene id G2328
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 8629797 ~ 8630847 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU3067
actgatcaaaataaacgctttttaggagagatataagttctgtgtaaatatttataagacaatacctgacaaaatctgttttaatgacgttaatcactgtgacagcgctagtcgcagtttcaccgcagcaaaggacgaggacgtgaatcacttatctaaccagcctttactgatttctgcccccaataaccctttcaataacctccaatagcctttaatagtcttcagtagccttcaacagtctaaccctGCAGCCGTGGTgggtccactaaactccgtagttataaacatcatgaggttagcagcgcgctaactgacctgtttataatgtaatccgagcagtgactccgggacggctgctctaaactgctgct
>TU3068
actgatcaaaataaacgctttttaggagagatataagttctgtgtaaatatttataagacaatacctgacaaaatctgttttaatgacgttaataaacatcactgtgacagcgctagtcgcagtttcaccacagcaaaggacgaggacgtgaatcacttatctaaccagccctgatttctgcccccaataaccctttcaataacctccaatagcctttaatagtcttcagtagccttcaacagtctaaccctGCAGCCGTGGTgggtccactaaactccgtagttataaacatcatgaggttagcagcgcgctaactgacctgtttataatgtaatccgagcagtgactccgggacggctgctctaaactgctgct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU3067 False 374 lncRNA 0.32 2 8629797 8630847
TU3068 True 376 lncRNA 0.37 2 8629797 8630847

Neighbor

gene id symbol gene type direction distance location
LOC103026472 LOC108432989,LOC108277724 coding upstream 849937 7317013 ~ 7779860 (+)
LOC111192949 NA coding upstream 1356490 7270865 ~ 7273307 (+)
LOC103038844 NA coding upstream 1427231 7189480 ~ 7202566 (+)
LOC103039155 NA coding upstream 1441224 7181782 ~ 7188573 (+)
LOC111194639 NA coding upstream 1461997 7162246 ~ 7167800 (+)
LOC111192950 LOC108432968 coding downstream 45815 8676662 ~ 8697582 (+)
LOC103023232 NA coding downstream 176320 8807167 ~ 8816687 (+)
LOC103027547 NA coding downstream 180401 8811248 ~ 8813220 (+)
LOC111194918 NA coding downstream 191643 8822490 ~ 8826360 (+)
LOC103022922 LOC103022922,LOC108277434 coding downstream 206525 8837372 ~ 8839379 (+)
G2326 NA non-coding upstream 1886 8627648 ~ 8627911 (+)
G2174 NA non-coding upstream 750271 7877733 ~ 7879526 (+)
G2125 NA non-coding upstream 883885 7708197 ~ 7745912 (+)
G2124 NA non-coding upstream 1006536 7622811 ~ 7623261 (+)
G2047 NA non-coding upstream 1423119 7206347 ~ 7206678 (+)
G2362 stim1,LOC108277929,LOC108432992,LOC101465674,LOC100691215,LOC102214188 non-coding downstream 112169 8743016 ~ 8787010 (+)
G2393 NA non-coding downstream 226506 8857353 ~ 8862747 (+)
G2400 nos2,LOC108432969 non-coding downstream 245005 8875852 ~ 8882592 (+)
G2443 NA non-coding downstream 543489 9174336 ~ 9174756 (+)
G2453 NA non-coding downstream 684837 9315684 ~ 9316134 (+)
G2304 NA other upstream 69319 8560066 ~ 8560478 (+)
LOC103030091 ptbp2,ptbp2b,LOC103030091,LOC108442283,LOC107594658,LOC107718150,LOC107570490,LOC108277987 other upstream 2075347 6513144 ~ 6554450 (+)
rwdd3 rwdd3 other upstream 2215003 6408846 ~ 6414794 (+)
pnkp pnkp,LOC107749649,LOC107672387,LOC107561379,LOC107758514 other upstream 2926614 5681026 ~ 5703183 (+)
LOC111192942 NA other upstream 3352809 5250484 ~ 5276988 (+)
G2358 LOC108432992,LOC101077340,LOC100691215,LOC101465674 other downstream 101876 8732723 ~ 8734952 (+)
lyrm9 lyrm9,LOC102789908 other downstream 313614 8944461 ~ 8957392 (+)
G2509 NA other downstream 1001018 9631865 ~ 9670125 (+)
LOC103039705 gdpd5b,gdpd5,LOC103039705,LOC108433002,LOC108277648,LOC107666190,LOC107682503 other downstream 1003246 9634093 ~ 9743491 (+)
LOC103029949 slc46a1 other downstream 2627599 11258446 ~ 11279177 (+)

Expression


Co-expression Network