G2362 (stim1,LOC108277929,LOC108432992,LOC101465674,LOC100691215,LOC102214188)


Basic Information

Item Value
gene id G2362
gene name stim1,LOC108277929,LOC108432992,LOC101465674,LOC100691215,LOC102214188
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 8743016 ~ 8787010 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU3120
GGAATATCTTCACAATCCTTACTCCTTCTAATACACCAATCCCTGACCTTTGACATTCATTGTGCACAtattcacacacttacactgtcCAAGAACACAGGTCATGAAGACTCTGCTCAGCCCTCTGCAGACCCTCCAGGTCCTTCATCATCTTCTTCATGTGGTCTTTTGAGTGACGGTTTTGAATAAAAGCAAACCAGCAGCCTCCCATTCCAATTACAATAGACACCACCAGCATGAAGTCCTTTAAATGATTGTGACTGTTCATCATAGGGGCTCCAAACAGGACTGTGTCCAGAGCCTTCAGTTGAAGTTTCTGAGTGTGACTGCGGTCCAGAATCTTCAGCACTGTCACTGTTAAAGTGGAGTTCTTCACAGCCAGGCGTGGCATAGTAGTTCCACTGAAGTTCATTTTCCTGAAAGCCTCTGCATACTGCGATAACTCCACATACGATTCCAGCCACTCCACCACCTCATCCACTGTCCAGTTATATACCTTAGAGGATTTCCATGAATTCCACAGGTCCTCCACACTGATGAACTGATCATCGCCATGAAAACTGTTATGCTTGGCTTTGGGGTCATGGTAGTTGAGGTCTTCTCTCAGGAACCCATCAGTCTCTGAGACATCCACGTTTCCATTGGCATCGTCATCCATTTGCTTGTGGATGTTGCGGATGGCCTCGAAACTGAGGATGGCATTTTCATCTTGGCACAGCGGCTCATCGATGCGGCACAGTTCTTGTCGACTTGTACTTGCTCCGTGCTGACTTGATTGAGCTTGTCTGTCCAACACTTTCCCAAGAAGCACAAGCACATAATCCATAGCGAAGCCAGTTTGCCAAACTCCATAGTGACACTTGAGTCAATCTCGGAGTTGCTGCAGTTTCTCACTTTTGGAGATGAAAGTCGGAGAAGGTGCGTGTCGGTTAGGTTCTCTTCCAGCTCCCATGAGAGTCCAGCCGGTACTCCATCCACACACAGGCGAAATAGCTGTCTagctagataaataaaaagcagaCTGGCTAGTTAGTTTACTATCTATCGAGCTATTATTACTAATTTACacctttctcctcctcctcttccagCTGGCTGTCTTCTCTACAGAGCTAACACCACTGACAGCCAGCCAGCTCAGACCCGGACTACTGCAGTGACTCCAGCTCCGACCAAACAACCAAATTAAGACCGGAAAAACACACAGTAATCCAAACAGGAGGTCTTCTTCTAAAGAGGCCCCAGACAATCCACCAGAGGCTGAAGGCAGGAGCTGACTGGCTGCCCCTGTCTATCCCAGGCTGT

Function

symbol description
stim1 Enables several functions, including calcium channel regulator activity; identical protein binding activity; and microtubule plus-end binding activity. Involved in several processes, including detection of calcium ion; enamel mineralization; and regulation of calcium ion transport. Located in cortical endoplasmic reticulum; plasma membrane raft; and sarcoplasmic reticulum membrane. Is integral component of endoplasmic reticulum membrane and integral component of plasma membrane. Implicated in Stormorken syndrome; immunodeficiency 10; and tubular aggregate myopathy 1.

NR:

description
PREDICTED: stromal interaction molecule 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU3120 True 1305 lncRNA 0.40 8 8743016 8787010

Neighbor

gene id symbol gene type direction distance location
LOC111192950 LOC108432968 coding upstream 45434 8676662 ~ 8697582 (+)
LOC103026472 LOC108432989,LOC108277724 coding upstream 963156 7317013 ~ 7779860 (+)
LOC111192949 NA coding upstream 1469709 7270865 ~ 7273307 (+)
LOC103038844 NA coding upstream 1540450 7189480 ~ 7202566 (+)
LOC103039155 NA coding upstream 1554443 7181782 ~ 7188573 (+)
LOC103023232 NA coding downstream 20157 8807167 ~ 8816687 (+)
LOC103027547 NA coding downstream 24238 8811248 ~ 8813220 (+)
LOC111194918 NA coding downstream 35480 8822490 ~ 8826360 (+)
LOC103022922 LOC103022922,LOC108277434 coding downstream 50362 8837372 ~ 8839379 (+)
LOC103022607 chrna10a,LOC108432977,LOC107570043,LOC446029,LOC106567906 coding downstream 59830 8846840 ~ 8854201 (+)
G2328 NA non-coding upstream 112169 8629797 ~ 8630847 (+)
G2326 NA non-coding upstream 115105 8627648 ~ 8627911 (+)
G2174 NA non-coding upstream 863490 7877733 ~ 7879526 (+)
G2125 NA non-coding upstream 997104 7708197 ~ 7745912 (+)
G2124 NA non-coding upstream 1119755 7622811 ~ 7623261 (+)
G2393 NA non-coding downstream 70343 8857353 ~ 8862747 (+)
G2400 nos2,LOC108432969 non-coding downstream 88842 8875852 ~ 8882592 (+)
G2443 NA non-coding downstream 387326 9174336 ~ 9174756 (+)
G2453 NA non-coding downstream 528674 9315684 ~ 9316134 (+)
LOC111195023 NA non-coding downstream 599258 9386268 ~ 9394588 (+)
G2358 LOC108432992,LOC101077340,LOC100691215,LOC101465674 other upstream 8064 8732723 ~ 8734952 (+)
G2304 NA other upstream 182538 8560066 ~ 8560478 (+)
LOC103030091 ptbp2,ptbp2b,LOC103030091,LOC108442283,LOC107594658,LOC107718150,LOC107570490,LOC108277987 other upstream 2188566 6513144 ~ 6554450 (+)
rwdd3 rwdd3 other upstream 2328222 6408846 ~ 6414794 (+)
pnkp pnkp,LOC107749649,LOC107672387,LOC107561379,LOC107758514 other upstream 3039833 5681026 ~ 5703183 (+)
lyrm9 lyrm9,LOC102789908 other downstream 157451 8944461 ~ 8957392 (+)
G2509 NA other downstream 844855 9631865 ~ 9670125 (+)
LOC103039705 gdpd5b,gdpd5,LOC103039705,LOC108433002,LOC108277648,LOC107666190,LOC107682503 other downstream 847083 9634093 ~ 9743491 (+)
LOC103029949 slc46a1 other downstream 2471436 11258446 ~ 11279177 (+)
G2910 sarm1,LOC107756984 other downstream 2501121 11288131 ~ 11288846 (+)

Expression


Co-expression Network