G2393


Basic Information

Item Value
gene id G2393
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 8857353 ~ 8862747 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU3165
CGGTCATTAAAAATGCAACAATGTAATATAAACTCTAACTTCTTTTGTTCAGACAGTCAGCACTGGATATATGTTTTCAGTGAGCATTTTATCACTGAACATTCTCAGAGGATGTACCTGCAGCTCGCTCTGAAGCTGTTCTTCAATATCTGGACAGGAAAGGAGTCAACTTCACTATGATGGTGTTGAACTTTCAGTGGGAACAGACTGTTCCTGCTCTTCTGAAGCTTCTGTCGGGTCTTTCTGTTCTACTGCCTCATCCAACACAGGACCAGTTCGCTTTGCTCTCACACCAGTGCCTCCAACCCTTCTGAGCAAAACTCCTGCAGCAAGAAGAGCCTTCGCCGTCTCCTCAAACAAGTTCTCAGGATTCACATCCCCCCTGCTCTCCAACTCACTGTACTTGTCCACGAACCTCTGGCATGTTGAGAGAAAGTAGGTTTTACTGAGATCAAATGGTCTCGATTCAATTCCATACACCTTGAAGAATTTCGCTCGTATTTCATCTTCTTTGTAAAAGATTTCAGGTACATGGTCGTCCCTCTTTTGTGGCCAAATCCTTTTTGATGATTTCACATATAGAGGTTCTCTCTTGGGAGGGAAAGCAGTGTACACGTCAAACCAGAGCGGCTTCTGTGACTCCTTGATCACTCCAGAGCGCATCAAATCTCGAACTCGGGTATACACAGTCCCGAACTTCTCCAGCCTGCTGCCCGCCATGCTGTCTCTTCACTACAGTCCGCACTGATTCACTGATCCTCCACGTTTAACTCTCTAAACCTtctacaaacacaaaacacaccgcAGAGACACGCAGGGGTCAGAAACTCTCCCCCAGCGTGCTGCTCCGCGCAGCGCCCTGTGGATCTATCTCACC

Function

GO: NA

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU3165 True 877 lncRNA 0.02 5 8857353 8862747

Neighbor

gene id symbol gene type direction distance location
LOC103022607 chrna10a,LOC108432977,LOC107570043,LOC446029,LOC106567906 coding upstream 3152 8846840 ~ 8854201 (+)
LOC103022922 LOC103022922,LOC108277434 coding upstream 17974 8837372 ~ 8839379 (+)
LOC111194918 NA coding upstream 30993 8822490 ~ 8826360 (+)
LOC103023232 NA coding upstream 40666 8807167 ~ 8816687 (+)
LOC103027547 NA coding upstream 44133 8811248 ~ 8813220 (+)
LOC111192952 NA coding downstream 76892 8939639 ~ 8940410 (+)
LOC103038411 NA coding downstream 291642 9154389 ~ 9156240 (+)
LOC103045140 wscd1,LOC108432998,LOC107756514,LOC107682602,LOC107666180 coding downstream 545352 9408099 ~ 9463585 (+)
LOC103038783 LOC108432999,LOC108278263,LOC106613073,LOC107589733,LOC107714181,LOC106581277,LOC105901427,LOC107666202 coding downstream 709773 9572520 ~ 9600832 (+)
LOC111192769 NA coding downstream 894089 9756836 ~ 9759186 (+)
G2362 stim1,LOC108277929,LOC108432992,LOC101465674,LOC100691215,LOC102214188 non-coding upstream 70343 8743016 ~ 8787010 (+)
G2328 NA non-coding upstream 226506 8629797 ~ 8630847 (+)
G2326 NA non-coding upstream 229442 8627648 ~ 8627911 (+)
G2174 NA non-coding upstream 977827 7877733 ~ 7879526 (+)
G2125 NA non-coding upstream 1111441 7708197 ~ 7745912 (+)
G2400 nos2,LOC108432969 non-coding downstream 13105 8875852 ~ 8882592 (+)
G2443 NA non-coding downstream 311589 9174336 ~ 9174756 (+)
G2453 NA non-coding downstream 452937 9315684 ~ 9316134 (+)
LOC111195023 NA non-coding downstream 523521 9386268 ~ 9394588 (+)
G2464 NA non-coding downstream 535847 9398594 ~ 9399000 (+)
G2358 LOC108432992,LOC101077340,LOC100691215,LOC101465674 other upstream 122401 8732723 ~ 8734952 (+)
G2304 NA other upstream 296875 8560066 ~ 8560478 (+)
LOC103030091 ptbp2,ptbp2b,LOC103030091,LOC108442283,LOC107594658,LOC107718150,LOC107570490,LOC108277987 other upstream 2302903 6513144 ~ 6554450 (+)
rwdd3 rwdd3 other upstream 2442559 6408846 ~ 6414794 (+)
pnkp pnkp,LOC107749649,LOC107672387,LOC107561379,LOC107758514 other upstream 3154170 5681026 ~ 5703183 (+)
lyrm9 lyrm9,LOC102789908 other downstream 81714 8944461 ~ 8957392 (+)
G2509 NA other downstream 769118 9631865 ~ 9670125 (+)
LOC103039705 gdpd5b,gdpd5,LOC103039705,LOC108433002,LOC108277648,LOC107666190,LOC107682503 other downstream 771346 9634093 ~ 9743491 (+)
LOC103029949 slc46a1 other downstream 2395699 11258446 ~ 11279177 (+)
G2910 sarm1,LOC107756984 other downstream 2425384 11288131 ~ 11288846 (+)

Expression


Co-expression Network