LOC111195023


Basic Information

Item Value
gene id LOC111195023
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 9386268 ~ 9394588 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU3255
tGTGGCAGGATGGGTGTTTTTGTCTGGTAATCTTGTAAGCATTTGGGCTAAATAAAGCTCTGTGTTAAAATATTAGTGATTTGCTTACTTTTTCTACTTTAACTGACGTGAGTTGTTTACAAACATCCAGCAAATCTTTCCCTTTTTGTCAGCCGGCTGTGGGTGGTGTAATTCCTGCGTGCCTAATTCTAATATATGGGTTGATTGCCTTTAGTTCATTGGCTGAATAATCTGACCTGGGACTATATGTAGGCCAGGTGGCTGTTACCTGGGACACACCCTCTGTGGTTCCCACCCCCCTTCCTCGGCGTGCTGCTGGGCGAGGTCTGCAGTTTGGCGTTTGGTGTGGCTGGGTGAATGCTCTCCTTTGTCTTGGGAATTTTCACAAGCGTGCGGTAGCTCAGTTTGTTTTTCGCTGTTTTCTCTGATTAATCCTGGTGCTGAGTGTTTCTCCTGCTCCATTTCAGTGCTGAGGCATTTGTGAGGAGATTGCTCCGGTGGTTTATGCCACGTGCAAAGGTTTCCGTCTGTGGTAGGTTATAATTTCCTTTCACTAACTTTGATGCTATAATAAACCCTCAGTGGGTTAATCTGGTTTATATCTTTAGTGTGAAGCTACGAGAAGTGTTGTGACTTTCCCGCTGTCTGCCGTGGAGAAGTGAAGCCTTGGTGGGTATGGGTGAGCGcctatgtatattttaaatttagttattttctAGTTCTGATGTTACGGGGTGGTCCTAATGTTTTGCAGGAAGCTGGGGTGGTGGAGTACGGGGAGTGTCCAATACAGCTCtacccgtgtgtgtgtgagatcacCTGTGTCCCCCTCTTCGCGGAGGCTCCTCCCCCTGCATTAgtgctattgtttttttttttttttgtattttcttttaggCTTTATggttcttttctattttttttctcctctgcttattattgttatattttgtgttaATTGTTTTGTATGTCCAGACTCagtcctggtgtgtgtgctgccTCCGGTGAGCTGTAGCGGActggtttgctttttttttctgaacgcGCGCTGCATGTGACTCAgcgcgctgtgtgtgtgtgtgtgtctgtgtgtgtgttactataCTTCCTGGGTCCTGAGTT
>XR_002651425.1
TTATGCCAACGTGCAAAGGTTTCCGTCTGTGTGTGAAGCTACGAGAAGTGTTGTGACTTTCCCGCTGTCTGCCGTGGAGAAGTGAAGCCTTGGAAGCTGGGGTGGTGGAGTACGGGGAGTGTCCAATACAGCTCTacccgtgtgtgtgtgccagaTCACCTGTGTCCCCCTCTTCGCGGAGGCTCCTCCCCCTGCATTAgtgctattgtttttttttttgtattttcttttaggCTTTATggttcttttctattttttttctcctctgcttattattgttatattttgtgttaATTGTTTTGTATGTCCAGACTCagtcctggtgtgtgtgctgccTCCGGTGAGCTGTAGCGGActggtttgctttttttttctgaacgcGCGCTGCATGTGACTCAgcgcgctgtgtgtgtgtgtgtgtctgtgtgtgtgttactataCTTCCTGGGT

Function

GO: NA

KEGG:

id description
ko04670 Leukocyte transendothelial migration
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes

RNA

RNA id representative length rna type GC content exon number start site end site
TU3255 True 1122 lncRNA 0.58 2 9386268 9394588
XR_002651425.1 False 450 lncRNA 0.48 3 9393970 9394580

Neighbor

gene id symbol gene type direction distance location
LOC103038411 NA coding upstream 230028 9154389 ~ 9156240 (+)
LOC111192952 NA coding upstream 445858 8939639 ~ 8940410 (+)
LOC103022607 chrna10a,LOC108432977,LOC107570043,LOC446029,LOC106567906 coding upstream 532067 8846840 ~ 8854201 (+)
LOC103022922 LOC103022922,LOC108277434 coding upstream 546889 8837372 ~ 8839379 (+)
LOC111194918 NA coding upstream 559908 8822490 ~ 8826360 (+)
LOC103045140 wscd1,LOC108432998,LOC107756514,LOC107682602,LOC107666180 coding downstream 13511 9408099 ~ 9463585 (+)
LOC103038783 LOC108432999,LOC108278263,LOC106613073,LOC107589733,LOC107714181,LOC106581277,LOC105901427,LOC107666202 coding downstream 177932 9572520 ~ 9600832 (+)
LOC111192769 NA coding downstream 362248 9756836 ~ 9759186 (+)
LOC103041157 NA coding downstream 514964 9909552 ~ 9971315 (+)
LOC103041662 NA coding downstream 596985 9991573 ~ 10006311 (+)
G2453 NA non-coding upstream 70134 9315684 ~ 9316134 (+)
G2443 NA non-coding upstream 211512 9174336 ~ 9174756 (+)
G2400 nos2,LOC108432969 non-coding upstream 503676 8875852 ~ 8882592 (+)
G2393 NA non-coding upstream 523521 8857353 ~ 8862747 (+)
G2362 stim1,LOC108277929,LOC108432992,LOC101465674,LOC100691215,LOC102214188 non-coding upstream 599258 8743016 ~ 8787010 (+)
G2464 NA non-coding downstream 4006 9398594 ~ 9399000 (+)
G2466 NA non-coding downstream 69508 9464096 ~ 9465472 (+)
G2481 NA non-coding downstream 90972 9485560 ~ 9489942 (+)
G2484 NA non-coding downstream 96032 9490620 ~ 9491298 (+)
G2485 NA non-coding downstream 96792 9491380 ~ 9491632 (+)
lyrm9 lyrm9,LOC102789908 other upstream 428876 8944461 ~ 8957392 (+)
G2358 LOC108432992,LOC101077340,LOC100691215,LOC101465674 other upstream 651316 8732723 ~ 8734952 (+)
G2304 NA other upstream 825790 8560066 ~ 8560478 (+)
LOC103030091 ptbp2,ptbp2b,LOC103030091,LOC108442283,LOC107594658,LOC107718150,LOC107570490,LOC108277987 other upstream 2831818 6513144 ~ 6554450 (+)
rwdd3 rwdd3 other upstream 2971474 6408846 ~ 6414794 (+)
G2509 NA other downstream 237277 9631865 ~ 9670125 (+)
LOC103039705 gdpd5b,gdpd5,LOC103039705,LOC108433002,LOC108277648,LOC107666190,LOC107682503 other downstream 239505 9634093 ~ 9743491 (+)
LOC103029949 slc46a1 other downstream 1863858 11258446 ~ 11279177 (+)
G2910 sarm1,LOC107756984 other downstream 1893543 11288131 ~ 11288846 (+)
meox2 meox2,LOC103024054,LOC107683451,LOC107730826,LOC107582293,LOC107588208,LOC107704718 other downstream 2010955 11405543 ~ 11424451 (+)

Expression


Co-expression Network