G2484


Basic Information

Item Value
gene id G2484
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 9490620 ~ 9491298 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU3286
AAAGCATAGCTCACGGTTCTACACGCAGCAGTCTGCAGATGTTTTTTTGAATGATTAGGTGCTGTATCTCAAAGAGATTTTTATAAGATTAAGGCAGAGTAATAGATCATTTTTTATAGAGAAGGTGTTGGCAGAAAAGAGCTGGGCAGTGATGTGCTGAGAGTGTACAGAATAGCACCCACTTTTTGAAACAAGCCAAACTTGTGTAGTGAATCTAAATCTTgctattgtgtttgttttttttttttttatatatatattttataaatgctATACAGCAGCACTTTGTTCCTTGCATTGTTAAGTcaggagttttatcagcctgctTGGTGGACATTCTTGCAACTTGAAATTACTTGATTGCAGAAaggtttaattaaaaacatatgtTAACTTAACAGTTTTGTCATTTGTCTTAAATAAGGACACCCAACTTTAGTTAGGTATTCTTAGTATCTAGAACTTTTGGTGTGTGAgaagaactttttaaaagtcTGAAACTCTTAGtatgtaaaactgttttttttattgaagtataaataaatgtgaaattaGTAATTTAAACAAGAAATAATTAGTTGGTTTAACTtttcttaaaaacttaaaatttttaGTTGAGATCTAAACTCAAAAAATCgagtgcagtaagttgccttgaaattttgagttttctcaactt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU3286 True 679 lncRNA 0.45 1 9490620 9491298

Neighbor

gene id symbol gene type direction distance location
LOC103045140 wscd1,LOC108432998,LOC107756514,LOC107682602,LOC107666180 coding upstream 27035 9408099 ~ 9463585 (+)
LOC103038411 NA coding upstream 334380 9154389 ~ 9156240 (+)
LOC111192952 NA coding upstream 550210 8939639 ~ 8940410 (+)
LOC103022607 chrna10a,LOC108432977,LOC107570043,LOC446029,LOC106567906 coding upstream 636419 8846840 ~ 8854201 (+)
LOC103022922 LOC103022922,LOC108277434 coding upstream 651241 8837372 ~ 8839379 (+)
LOC103038783 LOC108432999,LOC108278263,LOC106613073,LOC107589733,LOC107714181,LOC106581277,LOC105901427,LOC107666202 coding downstream 81222 9572520 ~ 9600832 (+)
LOC111192769 NA coding downstream 265538 9756836 ~ 9759186 (+)
LOC103041157 NA coding downstream 418254 9909552 ~ 9971315 (+)
LOC103041662 NA coding downstream 500275 9991573 ~ 10006311 (+)
LOC103042389 LOC108444298 coding downstream 682983 10174281 ~ 10192344 (+)
G2481 NA non-coding upstream 678 9485560 ~ 9489942 (+)
G2466 NA non-coding upstream 25148 9464096 ~ 9465472 (+)
G2464 NA non-coding upstream 91620 9398594 ~ 9399000 (+)
LOC111195023 NA non-coding upstream 96032 9386268 ~ 9394588 (+)
G2453 NA non-coding upstream 174486 9315684 ~ 9316134 (+)
G2485 NA non-coding downstream 82 9491380 ~ 9491632 (+)
G2491 NA non-coding downstream 14412 9505710 ~ 9505977 (+)
G2513 hspa13,LOC107682527,LOC107589748 non-coding downstream 260161 9751459 ~ 9752131 (+)
G2539 NA non-coding downstream 273787 9765085 ~ 9765945 (+)
G2543 samsn1 non-coding downstream 280138 9771436 ~ 9772691 (+)
lyrm9 lyrm9,LOC102789908 other upstream 533228 8944461 ~ 8957392 (+)
G2358 LOC108432992,LOC101077340,LOC100691215,LOC101465674 other upstream 755668 8732723 ~ 8734952 (+)
G2304 NA other upstream 930142 8560066 ~ 8560478 (+)
LOC103030091 ptbp2,ptbp2b,LOC103030091,LOC108442283,LOC107594658,LOC107718150,LOC107570490,LOC108277987 other upstream 2936170 6513144 ~ 6554450 (+)
rwdd3 rwdd3 other upstream 3075826 6408846 ~ 6414794 (+)
G2509 NA other downstream 140567 9631865 ~ 9670125 (+)
LOC103039705 gdpd5b,gdpd5,LOC103039705,LOC108433002,LOC108277648,LOC107666190,LOC107682503 other downstream 142795 9634093 ~ 9743491 (+)
LOC103029949 slc46a1 other downstream 1767148 11258446 ~ 11279177 (+)
G2910 sarm1,LOC107756984 other downstream 1796833 11288131 ~ 11288846 (+)
meox2 meox2,LOC103024054,LOC107683451,LOC107730826,LOC107582293,LOC107588208,LOC107704718 other downstream 1914245 11405543 ~ 11424451 (+)

Expression


Co-expression Network