G2513 (hspa13,LOC107682527,LOC107589748)


Basic Information

Item Value
gene id G2513
gene name hspa13,LOC107682527,LOC107589748
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 9751459 ~ 9752131 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU3319
AGCCTGGTTGGCAGCTCTTATGGTGTAGTTTCTCTGCCTCTCGTCAAACTCTGCTGGAACAGATATAACCGCTTTCTCAATGGGAACTCCAAGATGCTTCTCTGCCATCTTTCTCATTTTCAACAGGAGGCGAGAGCCGATGAATTCGGGGGTCACTGTGAAAGTGCTGTTTGTGGAGACCAAAAACTCTGCGCTGCCGTTGTTGAAGGTGACCTTGAATGGGTAACGTGCACTCTCCTGGTCCAAAGTCTTCTGGTCAAATACCTTTCCTATAAACCTCTTGGCATCATATATTGTGTTTTGTGGGTTAATGTCTTGTAATTCCTGTCCTTCGTGTCCAGAATATATGCCGGTGTCTGTGAAGGACACCACACTCGGGATGCTTTTCCGTCCCTTCTCGTCTGGAATGACCTCCACATCTCCTGTTCCTGGCTGGAATGCTCCAACTGAGCAAAATGTGGTCCCAAGATCTAACCCAATTACCCTGGGTTTAGGAGGAGGCAGGTACTGTTGTCCAAGATATCCAGCCAGCAATAAGCCGAGGATTACC

Function

symbol description
hspa13 Predicted to enable several functions, including ATP binding activity; ATP hydrolysis activity; and misfolded protein binding activity. Predicted to be involved in cellular response to unfolded protein; chaperone cofactor-dependent protein refolding; and protein refolding. Predicted to be located in endoplasmic reticulum. Predicted to be active in mitochondrion. Is expressed in liver and post-vent region. Orthologous to human HSPA13 (heat shock protein family A (Hsp70) member 13).

NR:

description
PREDICTED: heat shock 70 kDa protein 13

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU3319 True 550 lncRNA 0.38 2 9751459 9752131

Neighbor

gene id symbol gene type direction distance location
LOC103038783 LOC108432999,LOC108278263,LOC106613073,LOC107589733,LOC107714181,LOC106581277,LOC105901427,LOC107666202 coding upstream 150627 9572520 ~ 9600832 (+)
LOC103045140 wscd1,LOC108432998,LOC107756514,LOC107682602,LOC107666180 coding upstream 287874 9408099 ~ 9463585 (+)
LOC103038411 NA coding upstream 595219 9154389 ~ 9156240 (+)
LOC111192952 NA coding upstream 811049 8939639 ~ 8940410 (+)
LOC103022607 chrna10a,LOC108432977,LOC107570043,LOC446029,LOC106567906 coding upstream 897258 8846840 ~ 8854201 (+)
LOC111192769 NA coding downstream 4705 9756836 ~ 9759186 (+)
LOC103041157 NA coding downstream 157421 9909552 ~ 9971315 (+)
LOC103041662 NA coding downstream 239442 9991573 ~ 10006311 (+)
LOC103042389 LOC108444298 coding downstream 422150 10174281 ~ 10192344 (+)
LOC103043114 NA coding downstream 474639 10226770 ~ 10239820 (+)
G2491 NA non-coding upstream 245482 9505710 ~ 9505977 (+)
G2485 NA non-coding upstream 259827 9491380 ~ 9491632 (+)
G2484 NA non-coding upstream 260161 9490620 ~ 9491298 (+)
G2481 NA non-coding upstream 261517 9485560 ~ 9489942 (+)
G2466 NA non-coding upstream 285987 9464096 ~ 9465472 (+)
G2539 NA non-coding downstream 12954 9765085 ~ 9765945 (+)
G2543 samsn1 non-coding downstream 19305 9771436 ~ 9772691 (+)
G2547 NA non-coding downstream 29362 9781493 ~ 9782062 (+)
G2554 NA non-coding downstream 55079 9807210 ~ 9819840 (+)
G2559 NA non-coding downstream 94871 9847002 ~ 9847841 (+)
LOC103039705 gdpd5b,gdpd5,LOC103039705,LOC108433002,LOC108277648,LOC107666190,LOC107682503 other upstream 7968 9634093 ~ 9743491 (+)
G2509 NA other upstream 81334 9631865 ~ 9670125 (+)
lyrm9 lyrm9,LOC102789908 other upstream 794067 8944461 ~ 8957392 (+)
G2358 LOC108432992,LOC101077340,LOC100691215,LOC101465674 other upstream 1016507 8732723 ~ 8734952 (+)
G2304 NA other upstream 1190981 8560066 ~ 8560478 (+)
LOC103029949 slc46a1 other downstream 1506315 11258446 ~ 11279177 (+)
G2910 sarm1,LOC107756984 other downstream 1536000 11288131 ~ 11288846 (+)
meox2 meox2,LOC103024054,LOC107683451,LOC107730826,LOC107582293,LOC107588208,LOC107704718 other downstream 1653412 11405543 ~ 11424451 (+)
G3096 NA other downstream 2172319 11924450 ~ 11927250 (+)
G3313 sept5b,LOC108425237 other downstream 3230494 12982625 ~ 12984269 (+)

Expression


Co-expression Network