G2560


Basic Information

Item Value
gene id G2560
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 9853932 ~ 9854164 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU3377
agtaatcaggaaaacgcttagtatgcaacataagtcggcaatacctcgcggtgtttgtttacaaacggaTGCCTTATATACAGGAGCTAGACAAGAATGAACCGGAAGTACTTCAGAATACAGGTGAATCAGAGCATCGgagcgtaacgcgattgggtgaaggtgaaaggttattattaatatcataaccaggggcattctgggaaatggagtccggtagtgtggaaggagaa

Function

GO: NA

KEGG:

id description
ko05202 Transcriptional misregulation in cancer

RNA

RNA id representative length rna type GC content exon number start site end site
TU3377 True 233 lncRNA 0.34 1 9853932 9854164

Neighbor

gene id symbol gene type direction distance location
LOC111192769 NA coding upstream 94746 9756836 ~ 9759186 (+)
LOC103038783 LOC108432999,LOC108278263,LOC106613073,LOC107589733,LOC107714181,LOC106581277,LOC105901427,LOC107666202 coding upstream 253100 9572520 ~ 9600832 (+)
LOC103045140 wscd1,LOC108432998,LOC107756514,LOC107682602,LOC107666180 coding upstream 390347 9408099 ~ 9463585 (+)
LOC103038411 NA coding upstream 697692 9154389 ~ 9156240 (+)
LOC111192952 NA coding upstream 913522 8939639 ~ 8940410 (+)
LOC103041157 NA coding downstream 55388 9909552 ~ 9971315 (+)
LOC103041662 NA coding downstream 137409 9991573 ~ 10006311 (+)
LOC103042389 LOC108444298 coding downstream 320117 10174281 ~ 10192344 (+)
LOC103043114 NA coding downstream 372606 10226770 ~ 10239820 (+)
LOC103043417 NA coding downstream 632322 10486486 ~ 10499361 (+)
G2559 NA non-coding upstream 6091 9847002 ~ 9847841 (+)
G2554 NA non-coding upstream 34092 9807210 ~ 9819840 (+)
G2547 NA non-coding upstream 71870 9781493 ~ 9782062 (+)
G2543 samsn1 non-coding upstream 81241 9771436 ~ 9772691 (+)
G2539 NA non-coding upstream 87987 9765085 ~ 9765945 (+)
G2561 NA non-coding downstream 575 9854739 ~ 9855859 (+)
G2563 NA non-coding downstream 61980 9916144 ~ 9918003 (+)
G2565 NA non-coding downstream 105727 9959891 ~ 9960450 (+)
G2567 NA non-coding downstream 125510 9979674 ~ 9979956 (+)
G2592 NA non-coding downstream 213355 10067519 ~ 10068311 (+)
LOC103039705 gdpd5b,gdpd5,LOC103039705,LOC108433002,LOC108277648,LOC107666190,LOC107682503 other upstream 110441 9634093 ~ 9743491 (+)
G2509 NA other upstream 183807 9631865 ~ 9670125 (+)
lyrm9 lyrm9,LOC102789908 other upstream 896540 8944461 ~ 8957392 (+)
G2358 LOC108432992,LOC101077340,LOC100691215,LOC101465674 other upstream 1118980 8732723 ~ 8734952 (+)
G2304 NA other upstream 1293454 8560066 ~ 8560478 (+)
LOC103029949 slc46a1 other downstream 1404282 11258446 ~ 11279177 (+)
G2910 sarm1,LOC107756984 other downstream 1433967 11288131 ~ 11288846 (+)
meox2 meox2,LOC103024054,LOC107683451,LOC107730826,LOC107582293,LOC107588208,LOC107704718 other downstream 1551379 11405543 ~ 11424451 (+)
G3096 NA other downstream 2070286 11924450 ~ 11927250 (+)
G3313 sept5b,LOC108425237 other downstream 3128461 12982625 ~ 12984269 (+)

Expression


Co-expression Network