G2577


Basic Information

Item Value
gene id G2577
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 10120630 ~ 10123738 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU3398
atatatatatatatatatatatatatatatatatgtcttatATGTCTTATATACGTTTTCCTGAACTGCATATAGTGCATATAATGTGATTCACCCTATACTTTTCTATGTATATtctgggTGGATATCAACGGTGCTTAAGGAACACTGACCAAACGCTAATTTAATTGCAAAtggtatttaatttaatttagtgcaATCACAGGAATCTTTGAATAAAGATCACTAAgttaacagtgtaaatgtatatatgaaCAGATTCAGCTACTTTACATTGCACCAATTGCTGACATAGTTGTGCAAATGCAGAAACACAGCTTCTAGATCCTAGATCCTGTAGAAAATTGCCAGCCAATAGAATTGGGATCTCTCGAACAGATCAAGCATCAATCTACAGGCACCATATATATTTGTGATTGAACTATGGAGCAGTTGAACCATGTTCTCTGAAAtgttggtgctccatccaatgcTTTCGAGATAAGTTGGACAGTTGATAATGAAGTGGGGTCGGGTGGTGATATGATCCACCATATGGATTTAAGGCTTGAAAGtgatcaaatcctcacagcaatgctccaaaatctagtaaaaggccttccctggacagtagagacagttgcaCCAATCTGCAAATAAGCTTTCCTGCGTATttgctttacaaaaaaaaagcagttaatAATAGCTCTTTGGAaaaatgccatagaagaaccccTTTTGGTTTCCCAATGAACCTTTCAATTTAACCAATGGTCATTTCAACAAAagactgtgtgagtgtgatgaGGCACTTCTAGGCCTAACTTATGCATCATGTAAAGGTTGTGAAAAGGCTAGTGAAATTTTTATCCAATAACTGTACAGCCAAGCCGAGAGCAAGCTAACAGCAACCTTTGTGACAAGTTTTTGGTTCTTTACTTCTCATAGATcttacaaatataaatacttaagcattagatacagtatttaGACCTTCATGATCTTTTTAATCACTGCTTtattgtccgtagtttatagaataaaacaacaatgttaattttactcaaacatatacctataaatagcaaaatcagagaaactgatttagaaactgaagtggtttcttgattttttttccagagctgtaaattatcttttaaatatcacgatatatttgATATGACATATTTCCCATCTTATATTAAGCCTtactaataactgtgtagttacacatgaATAATCCACACATCCACAATATAAATACTAGTgatcttttttacaaaatgtataattatacacacacacacacatacacacacacacatcggtATACATACATTACTTTTGGCTATACTTGTACCTTTACAGCAATAACCTTCCTTCTAATGTtgtaatatatgtgtaataagATATGGGTAACTGTATGTATAGAAACGACTGCTCTTTCTGTTAAAACTGTAGAGAAACTATTGTGTAATTGCATTAATCTAAACTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU3398 True 1475 lncRNA 0.52 3 10120630 10123738

Neighbor

gene id symbol gene type direction distance location
LOC103041662 NA coding upstream 114319 9991573 ~ 10006311 (+)
LOC103041157 NA coding upstream 149315 9909552 ~ 9971315 (+)
LOC111192769 NA coding upstream 361444 9756836 ~ 9759186 (+)
LOC103038783 LOC108432999,LOC108278263,LOC106613073,LOC107589733,LOC107714181,LOC106581277,LOC105901427,LOC107666202 coding upstream 519798 9572520 ~ 9600832 (+)
LOC103045140 wscd1,LOC108432998,LOC107756514,LOC107682602,LOC107666180 coding upstream 657045 9408099 ~ 9463585 (+)
LOC103042389 LOC108444298 coding downstream 50543 10174281 ~ 10192344 (+)
LOC103043114 NA coding downstream 103032 10226770 ~ 10239820 (+)
LOC103043417 NA coding downstream 362748 10486486 ~ 10499361 (+)
LOC103042748 LOC103042748,LOC108426910,LOC105898201,LOC104922853 coding downstream 961717 11085455 ~ 11089687 (+)
unc119 unc119,LOC103043060,LOC107704800,LOC107548572,LOC107713212 coding downstream 968419 11092157 ~ 11116667 (+)
LOC111195257 NA non-coding upstream 34 10104237 ~ 10120596 (+)
G2592 NA non-coding upstream 52319 10067519 ~ 10068311 (+)
G2567 NA non-coding upstream 140674 9979674 ~ 9979956 (+)
G2565 NA non-coding upstream 160180 9959891 ~ 9960450 (+)
G2563 NA non-coding upstream 202627 9916144 ~ 9918003 (+)
G2627 NA non-coding downstream 10170 10133908 ~ 10156173 (+)
G2644 NA non-coding downstream 89444 10213182 ~ 10213417 (+)
G2654 NA non-coding downstream 167961 10291699 ~ 10292515 (+)
G2665 NA non-coding downstream 288786 10412524 ~ 10413014 (+)
G2781 NA non-coding downstream 457463 10581201 ~ 10581668 (+)
LOC103039705 gdpd5b,gdpd5,LOC103039705,LOC108433002,LOC108277648,LOC107666190,LOC107682503 other upstream 377139 9634093 ~ 9743491 (+)
G2509 NA other upstream 450505 9631865 ~ 9670125 (+)
lyrm9 lyrm9,LOC102789908 other upstream 1163238 8944461 ~ 8957392 (+)
G2358 LOC108432992,LOC101077340,LOC100691215,LOC101465674 other upstream 1385678 8732723 ~ 8734952 (+)
G2304 NA other upstream 1560152 8560066 ~ 8560478 (+)
LOC103029949 slc46a1 other downstream 1134708 11258446 ~ 11279177 (+)
G2910 sarm1,LOC107756984 other downstream 1164393 11288131 ~ 11288846 (+)
meox2 meox2,LOC103024054,LOC107683451,LOC107730826,LOC107582293,LOC107588208,LOC107704718 other downstream 1281805 11405543 ~ 11424451 (+)
G3096 NA other downstream 1800712 11924450 ~ 11927250 (+)
G3313 sept5b,LOC108425237 other downstream 2858887 12982625 ~ 12984269 (+)

Expression


Co-expression Network