G2644


Basic Information

Item Value
gene id G2644
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 10213182 ~ 10213417 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU3470
gtgggtcctgctggcGTGAGCGCGGCAGGCACCGCGGGCTTGGGGGCGGCTGGCACCGCTGGCGAAGAAGCCGCTTCAGCGGGAGCtgagagtgcggctgccgccAAGACCCGGACTGGAGCCGCAGATTCAGCAGTGGGCGTGGTTGTAAACaccggaccggagcttgcttcCGGAGCCGGAGTCGAGGatctggaagccggccgggctgg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU3470 True 212 lncRNA 0.42 2 10213182 10213417

Neighbor

gene id symbol gene type direction distance location
LOC103042389 LOC108444298 coding upstream 20838 10174281 ~ 10192344 (+)
LOC103041662 NA coding upstream 206871 9991573 ~ 10006311 (+)
LOC103041157 NA coding upstream 241867 9909552 ~ 9971315 (+)
LOC111192769 NA coding upstream 453996 9756836 ~ 9759186 (+)
LOC103038783 LOC108432999,LOC108278263,LOC106613073,LOC107589733,LOC107714181,LOC106581277,LOC105901427,LOC107666202 coding upstream 612350 9572520 ~ 9600832 (+)
LOC103043114 NA coding downstream 13353 10226770 ~ 10239820 (+)
LOC103043417 NA coding downstream 273069 10486486 ~ 10499361 (+)
LOC103042748 LOC103042748,LOC108426910,LOC105898201,LOC104922853 coding downstream 872038 11085455 ~ 11089687 (+)
unc119 unc119,LOC103043060,LOC107704800,LOC107548572,LOC107713212 coding downstream 878740 11092157 ~ 11116667 (+)
LOC111195540 cdkl1,LOC108424097 coding downstream 1044324 11257741 ~ 11258661 (+)
G2627 NA non-coding upstream 57009 10133908 ~ 10156173 (+)
G2577 NA non-coding upstream 89444 10120630 ~ 10123738 (+)
LOC111195257 NA non-coding upstream 92586 10104237 ~ 10120596 (+)
G2592 NA non-coding upstream 144871 10067519 ~ 10068311 (+)
G2567 NA non-coding upstream 233226 9979674 ~ 9979956 (+)
G2654 NA non-coding downstream 78282 10291699 ~ 10292515 (+)
G2665 NA non-coding downstream 199107 10412524 ~ 10413014 (+)
G2781 NA non-coding downstream 367784 10581201 ~ 10581668 (+)
G2821 NA non-coding downstream 493761 10707178 ~ 10707408 (+)
G2822 NA non-coding downstream 494137 10707554 ~ 10707843 (+)
LOC103039705 gdpd5b,gdpd5,LOC103039705,LOC108433002,LOC108277648,LOC107666190,LOC107682503 other upstream 469691 9634093 ~ 9743491 (+)
G2509 NA other upstream 543057 9631865 ~ 9670125 (+)
lyrm9 lyrm9,LOC102789908 other upstream 1255790 8944461 ~ 8957392 (+)
G2358 LOC108432992,LOC101077340,LOC100691215,LOC101465674 other upstream 1478230 8732723 ~ 8734952 (+)
G2304 NA other upstream 1652704 8560066 ~ 8560478 (+)
LOC103029949 slc46a1 other downstream 1045029 11258446 ~ 11279177 (+)
G2910 sarm1,LOC107756984 other downstream 1074714 11288131 ~ 11288846 (+)
meox2 meox2,LOC103024054,LOC107683451,LOC107730826,LOC107582293,LOC107588208,LOC107704718 other downstream 1192126 11405543 ~ 11424451 (+)
G3096 NA other downstream 1711033 11924450 ~ 11927250 (+)
G3313 sept5b,LOC108425237 other downstream 2769208 12982625 ~ 12984269 (+)

Expression


Co-expression Network