G2654


Basic Information

Item Value
gene id G2654
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 10291699 ~ 10292515 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU3482
ctgacattaccctggataccgtggctcttgatacatcacaaagacttgctgtcttggtcacagatgcagcagcaagacgtgcaccaacaatttgtcctcttttgaactctggtatgtcacccataatgttgtgtGGATCAAGTCCAGCTGCTGAGGTTCAACCACACCGAGACATGAATCAGCTATCaaaacactctctcacacacacacacacacacacacgtgtatgTCCTGCGCAGAAGACAGGAGCAGCGCTCTGTGATGGACATAGCCTGAGGAAGACTGTTAAAGTTTCAGAGCTCCATGCTGAGAGCTCTTATCTCCTGCAGCAGTCTGAGACTCTGCTGCTGTTCCAGCTCTGATTATCAGCACTGCTGTTACTGAGAggccttaacacacacacacacacacacacacacagctagcgCTCACTGCTAACACTGCTACATACATAcactttaaccccttaaaccccCTTAACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU3482 True 482 lncRNA 0.39 2 10291699 10292515

Neighbor

gene id symbol gene type direction distance location
LOC103043114 NA coding upstream 51879 10226770 ~ 10239820 (+)
LOC103042389 LOC108444298 coding upstream 99355 10174281 ~ 10192344 (+)
LOC103041662 NA coding upstream 285388 9991573 ~ 10006311 (+)
LOC103041157 NA coding upstream 320384 9909552 ~ 9971315 (+)
LOC111192769 NA coding upstream 532513 9756836 ~ 9759186 (+)
LOC103043417 NA coding downstream 193971 10486486 ~ 10499361 (+)
LOC103042748 LOC103042748,LOC108426910,LOC105898201,LOC104922853 coding downstream 792940 11085455 ~ 11089687 (+)
unc119 unc119,LOC103043060,LOC107704800,LOC107548572,LOC107713212 coding downstream 799642 11092157 ~ 11116667 (+)
LOC111195540 cdkl1,LOC108424097 coding downstream 965226 11257741 ~ 11258661 (+)
ankmy2 ankmy2,ankmy2a,LOC107582236,LOC107586949,LOC107704763,LOC107683262,LOC107730870 coding downstream 1004054 11296569 ~ 11303882 (+)
G2644 NA non-coding upstream 78282 10213182 ~ 10213417 (+)
G2627 NA non-coding upstream 135526 10133908 ~ 10156173 (+)
G2577 NA non-coding upstream 167961 10120630 ~ 10123738 (+)
LOC111195257 NA non-coding upstream 171103 10104237 ~ 10120596 (+)
G2592 NA non-coding upstream 223388 10067519 ~ 10068311 (+)
G2665 NA non-coding downstream 120009 10412524 ~ 10413014 (+)
G2781 NA non-coding downstream 288686 10581201 ~ 10581668 (+)
G2821 NA non-coding downstream 414663 10707178 ~ 10707408 (+)
G2822 NA non-coding downstream 415039 10707554 ~ 10707843 (+)
G2828 NA non-coding downstream 455386 10747901 ~ 10748525 (+)
LOC103039705 gdpd5b,gdpd5,LOC103039705,LOC108433002,LOC108277648,LOC107666190,LOC107682503 other upstream 548208 9634093 ~ 9743491 (+)
G2509 NA other upstream 621574 9631865 ~ 9670125 (+)
lyrm9 lyrm9,LOC102789908 other upstream 1334307 8944461 ~ 8957392 (+)
G2358 LOC108432992,LOC101077340,LOC100691215,LOC101465674 other upstream 1556747 8732723 ~ 8734952 (+)
G2304 NA other upstream 1731221 8560066 ~ 8560478 (+)
LOC103029949 slc46a1 other downstream 965931 11258446 ~ 11279177 (+)
G2910 sarm1,LOC107756984 other downstream 995616 11288131 ~ 11288846 (+)
meox2 meox2,LOC103024054,LOC107683451,LOC107730826,LOC107582293,LOC107588208,LOC107704718 other downstream 1113028 11405543 ~ 11424451 (+)
G3096 NA other downstream 1631935 11924450 ~ 11927250 (+)
G3313 sept5b,LOC108425237 other downstream 2690110 12982625 ~ 12984269 (+)

Expression


Co-expression Network