G2781


Basic Information

Item Value
gene id G2781
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 10581201 ~ 10581668 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU3638
tagaggcgctgctgggctttcttggttatggagctggtgttgagggaccaggtgaggttctctgcaatgtgaacaccgaggaacttggtgttatccacaatttccacagcagagccgttgatgttcagcgggtggtggacacctggagctctcctgaagtcaacaaccatctccttggttttatccacgttaagagataggttgttggttctgcaccagtccgtcagccactgcacctcctctctgtatgctgactcgtcgttcttgctgatgaggcgaactacagttgtgtcatcagcgaacttgatgatgtggtttgagctgtactttgcagtacagtcatgagtcagcagagtgaacagcagtgggctgagcacacagccctggggggcgccggtgctcagtatggtggtgctggaggtgttgtttccaatcctgactgattgtggtctctcagtcaggaagtct

Function

NR:

description
uncharacterized protein LOC111197029

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU3638 True 468 lncRNA 0.42 1 10581201 10581668

Neighbor

gene id symbol gene type direction distance location
LOC103043417 NA coding upstream 81840 10486486 ~ 10499361 (+)
LOC103043114 NA coding upstream 341381 10226770 ~ 10239820 (+)
LOC103042389 LOC108444298 coding upstream 388857 10174281 ~ 10192344 (+)
LOC103041662 NA coding upstream 574890 9991573 ~ 10006311 (+)
LOC103041157 NA coding upstream 609886 9909552 ~ 9971315 (+)
LOC103042748 LOC103042748,LOC108426910,LOC105898201,LOC104922853 coding downstream 503787 11085455 ~ 11089687 (+)
unc119 unc119,LOC103043060,LOC107704800,LOC107548572,LOC107713212 coding downstream 510489 11092157 ~ 11116667 (+)
LOC111195540 cdkl1,LOC108424097 coding downstream 676073 11257741 ~ 11258661 (+)
ankmy2 ankmy2,ankmy2a,LOC107582236,LOC107586949,LOC107704763,LOC107683262,LOC107730870 coding downstream 714901 11296569 ~ 11303882 (+)
sostdc1 sostdc1 coding downstream 733304 11314972 ~ 11319136 (+)
G2665 NA non-coding upstream 168187 10412524 ~ 10413014 (+)
G2654 NA non-coding upstream 288686 10291699 ~ 10292515 (+)
G2644 NA non-coding upstream 367784 10213182 ~ 10213417 (+)
G2627 NA non-coding upstream 425028 10133908 ~ 10156173 (+)
G2577 NA non-coding upstream 457463 10120630 ~ 10123738 (+)
G2821 NA non-coding downstream 125510 10707178 ~ 10707408 (+)
G2822 NA non-coding downstream 125886 10707554 ~ 10707843 (+)
G2828 NA non-coding downstream 166233 10747901 ~ 10748525 (+)
G2836 NA non-coding downstream 202136 10783804 ~ 10784140 (+)
G2844 NA non-coding downstream 255773 10837441 ~ 10892120 (+)
LOC103039705 gdpd5b,gdpd5,LOC103039705,LOC108433002,LOC108277648,LOC107666190,LOC107682503 other upstream 837710 9634093 ~ 9743491 (+)
G2509 NA other upstream 911076 9631865 ~ 9670125 (+)
lyrm9 lyrm9,LOC102789908 other upstream 1623809 8944461 ~ 8957392 (+)
G2358 LOC108432992,LOC101077340,LOC100691215,LOC101465674 other upstream 1846249 8732723 ~ 8734952 (+)
G2304 NA other upstream 2020723 8560066 ~ 8560478 (+)
LOC103029949 slc46a1 other downstream 676778 11258446 ~ 11279177 (+)
G2910 sarm1,LOC107756984 other downstream 706463 11288131 ~ 11288846 (+)
meox2 meox2,LOC103024054,LOC107683451,LOC107730826,LOC107582293,LOC107588208,LOC107704718 other downstream 823875 11405543 ~ 11424451 (+)
G3096 NA other downstream 1342782 11924450 ~ 11927250 (+)
G3313 sept5b,LOC108425237 other downstream 2400957 12982625 ~ 12984269 (+)

Expression


Co-expression Network