G2822


Basic Information

Item Value
gene id G2822
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 10707554 ~ 10707843 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU3687
cctaaaaatagtattatgagcttttactaaaaggacatggaccagatatattccatcagtaaaaattagtcctaaggggcctacacaataatttttaattaatacttcttccttttgatcactccacccctgatcagttcagttaatgtcggtcctctccacatttctagttaaactgagtcacaagctgtaatttttttttattttaaaaggtttaatctgtgtgttttatttcggagtatttttaagcagctatcagaaaaatctcatcacagtttccatgattagac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU3687 True 290 lncRNA 0.35 1 10707554 10707843

Neighbor

gene id symbol gene type direction distance location
LOC103043417 NA coding upstream 208193 10486486 ~ 10499361 (+)
LOC103043114 NA coding upstream 467734 10226770 ~ 10239820 (+)
LOC103042389 LOC108444298 coding upstream 515210 10174281 ~ 10192344 (+)
LOC103041662 NA coding upstream 701243 9991573 ~ 10006311 (+)
LOC103041157 NA coding upstream 736239 9909552 ~ 9971315 (+)
LOC103042748 LOC103042748,LOC108426910,LOC105898201,LOC104922853 coding downstream 377612 11085455 ~ 11089687 (+)
unc119 unc119,LOC103043060,LOC107704800,LOC107548572,LOC107713212 coding downstream 384314 11092157 ~ 11116667 (+)
LOC111195540 cdkl1,LOC108424097 coding downstream 549898 11257741 ~ 11258661 (+)
ankmy2 ankmy2,ankmy2a,LOC107582236,LOC107586949,LOC107704763,LOC107683262,LOC107730870 coding downstream 588726 11296569 ~ 11303882 (+)
sostdc1 sostdc1 coding downstream 607129 11314972 ~ 11319136 (+)
G2821 NA non-coding upstream 146 10707178 ~ 10707408 (+)
G2781 NA non-coding upstream 125886 10581201 ~ 10581668 (+)
G2665 NA non-coding upstream 294540 10412524 ~ 10413014 (+)
G2654 NA non-coding upstream 415039 10291699 ~ 10292515 (+)
G2644 NA non-coding upstream 494137 10213182 ~ 10213417 (+)
G2828 NA non-coding downstream 40058 10747901 ~ 10748525 (+)
G2836 NA non-coding downstream 75961 10783804 ~ 10784140 (+)
G2844 NA non-coding downstream 129598 10837441 ~ 10892120 (+)
G2854 NA non-coding downstream 286750 10994593 ~ 10994809 (+)
G2856 NA non-coding downstream 289925 10997768 ~ 10998099 (+)
LOC103039705 gdpd5b,gdpd5,LOC103039705,LOC108433002,LOC108277648,LOC107666190,LOC107682503 other upstream 964063 9634093 ~ 9743491 (+)
G2509 NA other upstream 1037429 9631865 ~ 9670125 (+)
lyrm9 lyrm9,LOC102789908 other upstream 1750162 8944461 ~ 8957392 (+)
G2358 LOC108432992,LOC101077340,LOC100691215,LOC101465674 other upstream 1972602 8732723 ~ 8734952 (+)
G2304 NA other upstream 2147076 8560066 ~ 8560478 (+)
LOC103029949 slc46a1 other downstream 550603 11258446 ~ 11279177 (+)
G2910 sarm1,LOC107756984 other downstream 580288 11288131 ~ 11288846 (+)
meox2 meox2,LOC103024054,LOC107683451,LOC107730826,LOC107582293,LOC107588208,LOC107704718 other downstream 697700 11405543 ~ 11424451 (+)
G3096 NA other downstream 1216607 11924450 ~ 11927250 (+)
G3313 sept5b,LOC108425237 other downstream 2274782 12982625 ~ 12984269 (+)

Expression


Co-expression Network