G2860


Basic Information

Item Value
gene id G2860
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 11070035 ~ 11070944 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU3728
GGCTCAGACGATTAGGCgcgaagggagagagaggtctGATAGCTGCAGCTAGCTCCAGCTGCCGTCATATTATTAACTCGTGTTTACTGATTCTCCTGCTAGACTGGTGGTGTGCTCAAGCTAGTTTccaagctgagagagagagagagagagagagagtgaggcggAGAGTGAGACGGAGAGTGAAGGAGAGTGAGACGGCCGCATCTGCTCTAAA
>TU3729
GGCTCAGACGATTAGGCgcgaagggagagagaggtctGATAGCTGCAGCTAGCTCCAGCTGCCGTCATATTATTAACTCGTGTTTACTGATTCTCCTGCTAGACTGGTGGTGTGCTCAAGCTAGTTTccaagctgagagagagagagagagagagagagtgaggcggAGAGTGAGACGGAGAGTGAAGGAGAGTGAGACGGCCGCATCTGCTCTAAA
>TU3730
GGCTCAGACGATTAGGCgcgaagggagagagaggtctGATAGCTGCAGCTAGCTCCAGCTGCCGTCATATTATTAACTCGTGTTTACTGATTCTCCTGCTAGACTGGTGGTGTGCTCAAGCTAGTTTccaagctgagagagagagAGAGTGAGACGGAGAGTGAAGGAGAGTGAGACGGCCGCATCTGCTCTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU3728 True 217 lncRNA 0.40 2 11070035 11070944
TU3729 False 217 lncRNA 0.33 2 11070035 11070944
TU3730 False 195 lncRNA 0.45 3 11070035 11070944

Neighbor

gene id symbol gene type direction distance location
LOC103043417 NA coding upstream 570674 10486486 ~ 10499361 (+)
LOC103043114 NA coding upstream 830215 10226770 ~ 10239820 (+)
LOC103042389 LOC108444298 coding upstream 877691 10174281 ~ 10192344 (+)
LOC103041662 NA coding upstream 1063724 9991573 ~ 10006311 (+)
LOC103041157 NA coding upstream 1098720 9909552 ~ 9971315 (+)
LOC103042748 LOC103042748,LOC108426910,LOC105898201,LOC104922853 coding downstream 14511 11085455 ~ 11089687 (+)
unc119 unc119,LOC103043060,LOC107704800,LOC107548572,LOC107713212 coding downstream 21213 11092157 ~ 11116667 (+)
LOC111195540 cdkl1,LOC108424097 coding downstream 186797 11257741 ~ 11258661 (+)
ankmy2 ankmy2,ankmy2a,LOC107582236,LOC107586949,LOC107704763,LOC107683262,LOC107730870 coding downstream 225625 11296569 ~ 11303882 (+)
sostdc1 sostdc1 coding downstream 244028 11314972 ~ 11319136 (+)
G2856 NA non-coding upstream 71936 10997768 ~ 10998099 (+)
G2854 NA non-coding upstream 75226 10994593 ~ 10994809 (+)
G2844 NA non-coding upstream 177915 10837441 ~ 10892120 (+)
G2836 NA non-coding upstream 285895 10783804 ~ 10784140 (+)
G2828 NA non-coding upstream 321510 10747901 ~ 10748525 (+)
G2896 NA non-coding downstream 90471 11161415 ~ 11161630 (+)
G2902 NA non-coding downstream 197961 11268905 ~ 11269166 (+)
G2907 NA non-coding downstream 210312 11281256 ~ 11281961 (+)
G2918 NA non-coding downstream 241437 11312381 ~ 11312608 (+)
G2970 NA non-coding downstream 453701 11524645 ~ 11536611 (+)
LOC103039705 gdpd5b,gdpd5,LOC103039705,LOC108433002,LOC108277648,LOC107666190,LOC107682503 other upstream 1326544 9634093 ~ 9743491 (+)
G2509 NA other upstream 1399910 9631865 ~ 9670125 (+)
lyrm9 lyrm9,LOC102789908 other upstream 2112643 8944461 ~ 8957392 (+)
G2358 LOC108432992,LOC101077340,LOC100691215,LOC101465674 other upstream 2335083 8732723 ~ 8734952 (+)
G2304 NA other upstream 2509557 8560066 ~ 8560478 (+)
LOC103029949 slc46a1 other downstream 187502 11258446 ~ 11279177 (+)
G2910 sarm1,LOC107756984 other downstream 217187 11288131 ~ 11288846 (+)
meox2 meox2,LOC103024054,LOC107683451,LOC107730826,LOC107582293,LOC107588208,LOC107704718 other downstream 334599 11405543 ~ 11424451 (+)
G3096 NA other downstream 853506 11924450 ~ 11927250 (+)
G3313 sept5b,LOC108425237 other downstream 1911681 12982625 ~ 12984269 (+)

Expression


Co-expression Network