G2907


Basic Information

Item Value
gene id G2907
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 11281256 ~ 11281961 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU3790
accctGATATTGTACAGTTATTACTTGATCACTTGGCTAATTCCAGTTTCTCTGGTTATTACCAGTTGATTTCTGCACTAAACACACTGCATTAATATACATACATGAGGTTTAAACATTAAGGCAAGAAGAGTTAGCCCAGATGAGGATAAAGCTATCAACACTGTAAGGGaatgattaggttgtaaaagtCCAATAGTATCCTTTAATGTTAAGAGTATGTTACATGGCTCAAATATCACAGACTAGGAAATCAGAAACCTTCTGCTGATCcgttaaaaaataaacaggtaACCAATCGATAATAGCAATATCTAGTGTTTTAGGTCTTCCCAATACTGCATGTTGTTGTTACATGAAGTTTCAGTCTTACCTGCatagtgatatatagtgatatagaaGCTGGTTCAGAGGCAAGTAGCCATAATAGGTTCACTGTATTGCAGATGATGCAAAGTAAGCATCAGATGAGTAATGAATGAGTTTATGGTTAGAGCCGTTAAGCGTAGTTACCCTCTAGGTTCCTCTGTTGCTTTGTTTCGTCCCACTTTCCATTCTTACTTCCTGCAAAGTGGTCACATAAAACAGAAGGTTGATGGAACTTCATGCAATCTGTAATATTTAACTTCCTAAACTCATGTACACTTTTTAGTGTAAGACTGTTAGGTTAAGTTGTTCAAGTTATTTCCAAATGTGGGATTATTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU3790 True 706 lncRNA 0.32 1 11281256 11281961

Neighbor

gene id symbol gene type direction distance location
LOC111195540 cdkl1,LOC108424097 coding upstream 22595 11257741 ~ 11258661 (+)
unc119 unc119,LOC103043060,LOC107704800,LOC107548572,LOC107713212 coding upstream 164589 11092157 ~ 11116667 (+)
LOC103042748 LOC103042748,LOC108426910,LOC105898201,LOC104922853 coding upstream 191569 11085455 ~ 11089687 (+)
LOC103043417 NA coding upstream 781895 10486486 ~ 10499361 (+)
LOC103043114 NA coding upstream 1041436 10226770 ~ 10239820 (+)
ankmy2 ankmy2,ankmy2a,LOC107582236,LOC107586949,LOC107704763,LOC107683262,LOC107730870 coding downstream 14608 11296569 ~ 11303882 (+)
sostdc1 sostdc1 coding downstream 33011 11314972 ~ 11319136 (+)
ispd ispd coding downstream 38402 11320363 ~ 11364325 (+)
agmo agmo coding downstream 150002 11431963 ~ 11495096 (+)
etv1 etv1,LOC107683220,LOC107730861 coding downstream 223410 11505371 ~ 11610772 (+)
G2902 NA non-coding upstream 12090 11268905 ~ 11269166 (+)
G2896 NA non-coding upstream 119626 11161415 ~ 11161630 (+)
G2860 NA non-coding upstream 210312 11070035 ~ 11070944 (+)
G2856 NA non-coding upstream 283157 10997768 ~ 10998099 (+)
G2854 NA non-coding upstream 286447 10994593 ~ 10994809 (+)
G2918 NA non-coding downstream 30420 11312381 ~ 11312608 (+)
G2970 NA non-coding downstream 242684 11524645 ~ 11536611 (+)
G2969 NA non-coding downstream 292990 11574951 ~ 11612299 (+)
G2979 NA non-coding downstream 344637 11626598 ~ 11627779 (+)
LOC111192815 NA non-coding downstream 347325 11629286 ~ 11630831 (+)
LOC103029949 slc46a1 other upstream 2079 11258446 ~ 11279177 (+)
LOC103039705 gdpd5b,gdpd5,LOC103039705,LOC108433002,LOC108277648,LOC107666190,LOC107682503 other upstream 1537765 9634093 ~ 9743491 (+)
G2509 NA other upstream 1611131 9631865 ~ 9670125 (+)
lyrm9 lyrm9,LOC102789908 other upstream 2323864 8944461 ~ 8957392 (+)
G2358 LOC108432992,LOC101077340,LOC100691215,LOC101465674 other upstream 2546304 8732723 ~ 8734952 (+)
G2910 sarm1,LOC107756984 other downstream 6170 11288131 ~ 11288846 (+)
meox2 meox2,LOC103024054,LOC107683451,LOC107730826,LOC107582293,LOC107588208,LOC107704718 other downstream 123582 11405543 ~ 11424451 (+)
G3096 NA other downstream 642489 11924450 ~ 11927250 (+)
G3313 sept5b,LOC108425237 other downstream 1700664 12982625 ~ 12984269 (+)
LOC103035587 NA other downstream 2935846 14217807 ~ 14244380 (+)

Expression


Co-expression Network