G2979


Basic Information

Item Value
gene id G2979
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 11626598 ~ 11627779 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU3890
attagagcgggcacagcccgagataataaacgacgcggactgcgagtatAGCAAACCATTaaagcgggcacggcccgagataagaaACCGCGCAGACTGCGAGCCATTAAAGCATTacagagcgggcacggcccgagattaTGAACAACGCGAACtgagtacggtaaagcattagagcgggcacggcccgagataataaacaacgcggactgcgagtacagtaaaccattagagcgggcacggcccgagataataaacaacgcggactgcgagtacagtaaaccattagagcgggcacggcccgagataataaacaacgcggactgcgagtacagtaaaccattagagcgggcacggcccgagataataaacaacgcggactgcgagtacagtaaaccattagagcgggcacggcccgagataagaaACAACGCGGGCTGCGAGTACagcaaagcattagagcgggcacggcccgaggtaaacaacgcggacagcgagtcattaaagcattagagcgggcacggcccgaggtaaacaacgcgg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU3890 True 543 lncRNA 0.39 2 11626598 11627779

Neighbor

gene id symbol gene type direction distance location
etv1 etv1,LOC107683220,LOC107730861 coding upstream 15826 11505371 ~ 11610772 (+)
agmo agmo coding upstream 131502 11431963 ~ 11495096 (+)
ispd ispd coding upstream 262273 11320363 ~ 11364325 (+)
sostdc1 sostdc1 coding upstream 307462 11314972 ~ 11319136 (+)
ankmy2 ankmy2,ankmy2a,LOC107582236,LOC107586949,LOC107704763,LOC107683262,LOC107730870 coding upstream 322716 11296569 ~ 11303882 (+)
vwde vwde coding downstream 105150 11732929 ~ 11767714 (+)
LOC103026019 lsr,LOC108427013 coding downstream 163252 11791031 ~ 11805598 (+)
LOC103031217 mag,LOC108427016,LOC108277883,LOC107752306,LOC107683144,LOC107587088,LOC107704773 coding downstream 182396 11810175 ~ 11843921 (+)
LOC103031523 NA coding downstream 224123 11851902 ~ 11872341 (+)
LOC103026933 LOC108426918 coding downstream 249147 11876926 ~ 11880070 (+)
G2969 NA non-coding upstream 14299 11574951 ~ 11612299 (+)
G2970 NA non-coding upstream 89987 11524645 ~ 11536611 (+)
G2918 NA non-coding upstream 313990 11312381 ~ 11312608 (+)
G2907 NA non-coding upstream 344637 11281256 ~ 11281961 (+)
G2902 NA non-coding upstream 357432 11268905 ~ 11269166 (+)
LOC111192815 NA non-coding downstream 1507 11629286 ~ 11630831 (+)
LOC111195845 arl4a,arl4aa non-coding downstream 70778 11698557 ~ 11711348 (+)
G2985 NA non-coding downstream 77094 11704873 ~ 11706432 (+)
G2983 NA non-coding downstream 103743 11731522 ~ 11754111 (+)
LOC111196183 NA non-coding downstream 330296 11958075 ~ 11958465 (+)
meox2 meox2,LOC103024054,LOC107683451,LOC107730826,LOC107582293,LOC107588208,LOC107704718 other upstream 202147 11405543 ~ 11424451 (+)
G2910 sarm1,LOC107756984 other upstream 337752 11288131 ~ 11288846 (+)
LOC103029949 slc46a1 other upstream 347421 11258446 ~ 11279177 (+)
LOC103039705 gdpd5b,gdpd5,LOC103039705,LOC108433002,LOC108277648,LOC107666190,LOC107682503 other upstream 1883107 9634093 ~ 9743491 (+)
G2509 NA other upstream 1956473 9631865 ~ 9670125 (+)
G3096 NA other downstream 296671 11924450 ~ 11927250 (+)
G3313 sept5b,LOC108425237 other downstream 1354846 12982625 ~ 12984269 (+)
LOC103035587 NA other downstream 2590028 14217807 ~ 14244380 (+)
LOC103039352 nova2,LOC103039352,LOC108440380,LOC108277822,LOC107669728,LOC107589717,LOC107756760,LOC107379798 other downstream 2816779 14444558 ~ 14505015 (+)
LOC107197063 capns1,LOC108425806,LOC105901516,LOC107700232,LOC107548486 other downstream 3212514 14840293 ~ 14845626 (+)

Expression


Co-expression Network