LOC111192815


Basic Information

Item Value
gene id LOC111192815
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 11629286 ~ 11630831 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU3892
TAGAGACAAAGTGCAGCAAGAAGATTTATTACAATAAGCACGTATGACAATTATAAATAGCGTAAATATAGTCTTTGGCTAAAGCCCCGTCGAAAGCCCAGGTCTGCAGCGTCTGAATCCTGCAGATCCTGCCGTATAGGTACGGCGGGGGCGGAGCCAATCCCCTGGGCAACCGGCGGGACcgaactggaggcggtggggaaggaggagggcgAAACGACAGTCGgcgtctgcaagcaggggagaacaggtatgagggaggtcttataaggacaggtgggagttggtgattggctgagaaaagtggCGTGATTTCGAGTTTCCCGCTAGAACCTGC
>XR_002650143.1
caagcaggggagaacaggtatgagggaggtcttataaggacaggtgggagttggtgattggctgagaaaagtggCGTGATTTCGAGTTTCCCGCTAGAACCTACGCGGAGCTTTCAGTTCTAGCAGGAAAACTGTAGAGACAAAGTGCAGCAAGAAGATTTATTACAATAAGCACGTATGACAATTATAAATAGCGTAAATATAGTCTTTGGCTAAAGCCCCGTCGAAAGCCCAGGTCTGCAGCGTCTGAATCCTGCAGATCCTGCCGTATAGGTACGGCGGGGGCGGAGCCAATCCCCTGGGCAACCGGCGGGACcgaactggaggcggtggggaaggaggagggcgAAACGACAGTCGgcgtctgcaagcaggggagaacaggtatgagggaggtcttataaggacaggtgggagttggtgattggctgagaaaagtggCGTGATTTCGAGTTTCCCGCTAGAACCTACGCGGAGCTTTCAGTTCTAGCAGGAAAACTGTAGAGACAAAGTGCAGCAAGAAGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU3892 False 337 lncRNA 0.36 2 11629773 11630831
XR_002650143.1 True 526 lncRNA 0.52 3 11629286 11630516

Neighbor

gene id symbol gene type direction distance location
etv1 etv1,LOC107683220,LOC107730861 coding upstream 18514 11505371 ~ 11610772 (+)
agmo agmo coding upstream 134190 11431963 ~ 11495096 (+)
ispd ispd coding upstream 264961 11320363 ~ 11364325 (+)
sostdc1 sostdc1 coding upstream 310150 11314972 ~ 11319136 (+)
ankmy2 ankmy2,ankmy2a,LOC107582236,LOC107586949,LOC107704763,LOC107683262,LOC107730870 coding upstream 325404 11296569 ~ 11303882 (+)
vwde vwde coding downstream 102098 11732929 ~ 11767714 (+)
LOC103026019 lsr,LOC108427013 coding downstream 160200 11791031 ~ 11805598 (+)
LOC103031217 mag,LOC108427016,LOC108277883,LOC107752306,LOC107683144,LOC107587088,LOC107704773 coding downstream 179344 11810175 ~ 11843921 (+)
LOC103031523 NA coding downstream 221071 11851902 ~ 11872341 (+)
LOC103026933 LOC108426918 coding downstream 246095 11876926 ~ 11880070 (+)
G2979 NA non-coding upstream 1507 11626598 ~ 11627779 (+)
G2969 NA non-coding upstream 16987 11574951 ~ 11612299 (+)
G2970 NA non-coding upstream 92675 11524645 ~ 11536611 (+)
G2918 NA non-coding upstream 316678 11312381 ~ 11312608 (+)
G2907 NA non-coding upstream 347325 11281256 ~ 11281961 (+)
LOC111195845 arl4a,arl4aa non-coding downstream 67726 11698557 ~ 11711348 (+)
G2985 NA non-coding downstream 74042 11704873 ~ 11706432 (+)
G2983 NA non-coding downstream 100691 11731522 ~ 11754111 (+)
LOC111196183 NA non-coding downstream 327244 11958075 ~ 11958465 (+)
G3129 gbe1 non-coding downstream 475560 12106391 ~ 12109036 (+)
meox2 meox2,LOC103024054,LOC107683451,LOC107730826,LOC107582293,LOC107588208,LOC107704718 other upstream 204835 11405543 ~ 11424451 (+)
G2910 sarm1,LOC107756984 other upstream 340440 11288131 ~ 11288846 (+)
LOC103029949 slc46a1 other upstream 350109 11258446 ~ 11279177 (+)
LOC103039705 gdpd5b,gdpd5,LOC103039705,LOC108433002,LOC108277648,LOC107666190,LOC107682503 other upstream 1885795 9634093 ~ 9743491 (+)
G2509 NA other upstream 1959161 9631865 ~ 9670125 (+)
G3096 NA other downstream 293619 11924450 ~ 11927250 (+)
G3313 sept5b,LOC108425237 other downstream 1351794 12982625 ~ 12984269 (+)
LOC103035587 NA other downstream 2586976 14217807 ~ 14244380 (+)
LOC103039352 nova2,LOC103039352,LOC108440380,LOC108277822,LOC107669728,LOC107589717,LOC107756760,LOC107379798 other downstream 2813727 14444558 ~ 14505015 (+)
LOC107197063 capns1,LOC108425806,LOC105901516,LOC107700232,LOC107548486 other downstream 3209462 14840293 ~ 14845626 (+)

Expression


Co-expression Network