LOC111195845 (arl4a,arl4aa)


Basic Information

Item Value
gene id LOC111195845
gene name arl4a,arl4aa
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 11698557 ~ 11711348 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU3894
gcttacgtcattttgggtataaaacatggagtcagatcagaggggggtcagaactctTACTTAGACGGCTGTAACACTGTCTTatatgtattggttctcctgaatattcagtactttgtaataaatacttggtttgctttcagcttcactccacctgtctgactctctctatcaaacgaacacgcaggggaagttgtaccccggacgagaggtgggggtagcccacctttcattttcttttctacaacaatttGGTGACCCCGGCCTCTGAACGAGTCTGACGAAGGACAGCATCCGGCACTGATCCACTCACGGCCGAACTTAACAAACCAGGTAAGCAGAGCCTGTTTAATCAAATTCTGCATATTGGCTATTTCAAATTTGAGTGGAGCGGCGCTCTGGCTGCTGTCCGGAGGAGAGCAGGAAGCATACCAAGctatttataaaaaagagtagatgctgttcctactcaagggtttataaaaaagagtagatgctgttcctactcaagggtttgtaaaaagagtagatgctgttcctactcaagggtttgtaaaaagagtagatgctgttcctactcaagggttAAGGATTGGACGCTGGCGTGTCCCCCCGGCTTCTGACGAGAAGTTCGGATAACGGCCAGGTGTAGGCTCACCTCGATCTTGATCCGCTCGCAAAAAGCCAGAGTAGACGCTGTTCCTACTCACCTCTATTTTTATTCGGTTTAAAAAAGCAGAAGCTGTACCTGCTTGGGTCGAAGCTGTGCCGACCTCTCTATTTTTAATTCAAAAGAGCAGACGCTGTACCTGttcttatctattttatttggttaaaaagagcagaagCTGTCCCTGCTCGGGTCGAAGCTGTTCCGACCTCTCTATTTTTTAATTCGGAAGAGTAGACGCTGTTCCTACTGTAAATCTCTtatgtttgtattaaaaataaacagatgttgTTCCTGTTCAAAACATTTCGTAAAAAATTAGTATACGCTGTACCTACTACGAACTTTTAAAAGTTATTGAATTAATAGTTATTGCATGATACTGTGGAGGTGCACCTGTGAGCGTGAAAGTGTGTGGCAGCGAATCAAAGActgtgtgcgagagagtgagcgctgctgaaatgtgtgtgcgtatgtgttagaCTTGTGTGTGGAACTGTGAGACTGAAAAAAGTGTGTGCGTATGCGTTACAGTGTGTGCGAGACAGACTGAATGCAACAtaagtgtgtgcgtatgtgttggagtgtgtgggtGCTCAtgtgtgattggttgagtgtaCGAACTCTTGTGTGTCAACGAAATAGGAATGGATGAGTCCCACTGCAGGGGAGGAGTCCAAGGTGAAGTAGGTGGGGTTGGTTCAGCCTATTGGTTTTCGACTGTGAAGTTGGTTATTTGTGAATTAACACTTGTGAGATATCATAGAAAATAGAACATCAGTTCAGTAGGGAAATAGAGTAATACACAGTGAAAATGGGGGACAGAGGTGAACAGGGGGAAAAGGCTTTTGTATgggtagatagatatatatatatatatatataagaaaatataaggataaaaaaacctaactatacaaggtaaagatctatctgtaaacggagcggGGCAGTAGATGTtactaatggtcataaataattaaataattaacagagtaaagtgcgatgacatcgattacgaaagtgactgatgtgacatagaactATAACAtgagataatataatataatatgcatACGTTATTAGACAGTTATCAGACAgttctaaaatgaaaatgtgaaaatgtgaatacccaatcatgagtacagtgtactttaatgtaagcaaggttggggaagtgttaatataaataattaagttgttgaataatgtcagAGAGGTGTGTGACTGGATAAATAATTAGAGAATTTAGAGAGTTTAATACAGGGATTATGGAGACAGAATTGAGgaaataattagcttaattttggGTATTGGACTATATCTTGGGGGCGCTAACCCAACAGGGACATATGTCTAACTCTATATTCTATTAGCAAagctaataatgaaaaaatgactGTGTGTGGCTGTTTCGGAATCGTCTCCTATTGCAGAAATACTAAGCAATTTGGATTGGCCATTTTTACAATGCTTTGTCGAAACTCAGCAGTATATTTTTCcccatatagttcactattaattacattatattataataatattgtacagaagatgtatgctagaaattccaaaatatactatgccatgcagtactgctgtgtaagatgtcctcagagcaggacaCATAAATATGGTTTCTTGTTTGATTCTTAAATAACCAgttcaataaatagaaaaatgctacatagttaatagtgaatgaattaatgagcgagccattccaaacacagctttttctatCAGGTGATTTAGTCAATTATCTTACTATTCGTTTCTTATTCAGACTGATCTCAGTTCAGTGCTGGCTGAATGAGACTTATATAAGACAAATGTAATATCTCATTTCTCTATGATCTCATGGATATCCGTCTATGCTAATATCTTGATTATCTTAAGAGCGATAGTAGATTTCAGAAACCAGTGAGGaaaaccttatttttatttttttattattattttttaaaggaaacgCAGTGTTGCATCTATTTCAAGCTACAGGGAATTTGGTATCTTTCTGATAAGGGGACAtaatcaaatatattaaaaaattgaGCCTTCTATTTTGCTTTCAATAcgctttactttctgcaatgaagaacttgctttactttctgcaatgaagaacttgcttcactttctttctgtatagtattaaattagactaaaaagagatctggaaaacagcataaatttagttttcatgcttatacaatgccacctataaaacaaatgcataattttctggctgtagcatgaacaaaatcagctaagcaatataacattgtttcatctgcataatggtaaagtttgcaatctgagaagcagagccagcactataatttatgtatatatatattaaataaacctGGACCAAAATTTAACCTTGTGGTACACCTTTCAGGTACAGATGCcaaatctgaataattattcattgacaTGCACTCTTTTGGGTCTAGTCCAGAGCAGTGTCATCAAAGCAAATAATTTGAGCTAATTTACGTGGACGAGAACAGGTGATAATGAtggtaataaatgaaatatgtatacagtaataatctataataaactATGGGTACTTGGTGCCTTGCACAGGCTTTCACGGTAAACACATCAGAGTGTGAATTTATGAAAGTACGACAGACCTGGGGTTGCGTTCCCTAACTGTCAGGAACTCTACGGCACTGAATCTTGATAAAATAGTGCTGCTACgctgtgtgtggttcagtgtGATAGGCTGGTTAGCCAAAGACGGGTAAGATCCCAACGTAATACAACGGGACAACCTAAGGCAGGcacagtctcgatctgaccaccacatgcattttaacagaaaacGGAGAAAACATCGTGGAGGGGACGCGCAACCCAGGGGGagagtgagtggatgaatgGAGTGATGGGGTGTGTGTCAGTGGAGGCTTGTGCAGGGTAGACCAGCCCAGTGGACAGGGGAAAGACAACAGAGGGTGGAGCAATTTTGTGTTAAGttttctgaaacagaaattctgtttcagaaaaagggGGAGATGTAAATAGATCACCATTATTACCACCATTATTCGCCCAGccattattttttacATTTTCatcttttttaatactttaaaatattcacttctttttctgctgttttaacattttcttcCGTTtcaatatcatatcatacagTTTTTCCAGTCCTTCTTTTAGTCCATCACCTATTATGGCACATGTTGGCTGTAAATGCCATGGTGTGATGGAGGCCAGCTCTCCAAGTGCCAGCATCTTCTTAATCTCTTCCACAGACAAAGCGTGTCTTAGGTCCTGCTTGTTTGCAACAATAAGCACAGGTACACCTTGAGTCTCTGAGGAACGTGCGATCTTGTGCAGTTCTGTTTTGGCTTCCTCCATCCTCTCAGCATCCACCGAATCCACTACGAACACAATGCCGTCCGTGCAGCGAGTGTAGGACTTCCAGAGTGGACGGAGCTTTTCCTGACCACCAACATCCCAGAAGTGAAAAGACACTGTTCTGGAGTCTCCAAGTGTTACTTTTACCTTCTCTGAATTGAATCCTTTAGTGGGAACAGTGTTCACAAATTCGTTGAATTGTAGTCTGTAAAGCACAGTGGTTTTCCCTGCTGAGTCCAGACCCAATATAGCAATGTGGACAGACTTAAAACAGGGAAGATTTGAAAGTAGGCCGGTCTGATCTGACATCCCATTCCCCATTTTGGCTTCTGGTGTGATCTCAGATGAACCAGGAGAAATCCATATCTTTTCCCCGACTCCAAATGCTTGTGCTCCAAGAATGCCTtaagataaaacaaaaagaaggtAACTTTTACACATCATGATACAGAGATAACAGGTAAGACCAACTACACAAGTTACAGCGTGACTAAGTCTCACACAACTGGTTTTAATCTCATGCTGTCAGCTTGCCTTTTCTCACACATTGCCATTTCTCACTCATACCACGAGTAGCAGTGCATTTCATTACCTGATAAATGTTGTTATTGTTATACACAATATACTTTTCTGAGAAAATGTGGATACTGTCAGTGTCATTACAAAGATTGCAATTAGTCCAGTAAAACTGTatgatgtttgttttaaa
>XR_002651868.1
tactcaagggtttgtaaaaagagtagatgctgttcctactcaagggttAAGGATTGGACGCTGGCGTGTCCCCCCGGCTTCTGACGAGAAGTTCGGATAACGGCCAGGTGTAGGCTCACCTCGATCTTGATCCGCTCGCAAAAAGCCAGAGTAGACGCTGTTCCTACTCACCTCTATTTTTATTCGGTTTAAAAAAGCAGAAGCTGTACCTGCTTGGGTCGAAGCTGTGCCGACCTCTCTATTTTTAATTCAAAAGAGCAGACGCTGTACCTGttcttatctattttatttggttaaaaagagcagaagCTGTCCCTGCTCGGGTCGAAGCTGTTCCGACCTCTCTATTTTTTAATTCGGAAGAGTAGACGCTGTTCCTACTGTAAATCTCTtatgtttgtattaaaaataaacagatgttgTTCCTGTTCAAAACATTTCGTAAAAAATTAGTATACGCTGTACCTACTACGAACTTTTAAAAGTTATTGAATTAATAGTTATTGCATGATACTGTGGAGGTGCACCTGTGAGCGTGAAAGTGTGTGGCAGCGAATCAAAGActgtgtgcgagagagtgagcgctgctgaaatgtgtgtgcgtatgtgttagaCTTGTGTGTGGAACTGTGAGACTGAAAAAAGTGTGTGCGTATGCGTTACAGTGTGTGCGAGACAGACTGAATGCAACAtaagtgtgtgcgtatgtgttggagtgtgtgggtGCTCAtgtgtgattggttgagtgtaCGAACTCTTGTGTGTCAACGAAATAGGAATGGATGAGTCCCACTGCAGGGGAGGAGTCCAAGGTGAAGTAGGGAAATAGAGTAATACACAGTGAAAATGGGGGACAGAGGTGAACAGGGGGAAAAGGCTTTTGTATgggtagatagatatatatatatatatatataagaaaatataaggata

Function

symbol description
arl4aa Predicted to enable GTP binding activity. Predicted to be involved in intracellular protein transport and vesicle-mediated transport. Predicted to be active in cytoplasm and plasma membrane. Is expressed in several structures, including axis; hematopoietic system; mesoderm; vasculature; and visual system. Orthologous to human ARL4A (ADP ribosylation factor like GTPase 4A).
arl4a Enables GTP binding activity. Predicted to be involved in intracellular protein transport and vesicle-mediated transport. Predicted to act upstream of or within brown fat cell differentiation. Located in cytosol; nuclear lumen; and plasma membrane.

NR:

description
PREDICTED: ADP-ribosylation factor-like protein 4A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU3894 True 4772 lncRNA 0.66 2 11698557 11711348
XR_002651868.1 False 933 lncRNA 0.43 2 11699096 11700127

Neighbor

gene id symbol gene type direction distance location
etv1 etv1,LOC107683220,LOC107730861 coding upstream 87785 11505371 ~ 11610772 (+)
agmo agmo coding upstream 203461 11431963 ~ 11495096 (+)
ispd ispd coding upstream 334232 11320363 ~ 11364325 (+)
sostdc1 sostdc1 coding upstream 379421 11314972 ~ 11319136 (+)
ankmy2 ankmy2,ankmy2a,LOC107582236,LOC107586949,LOC107704763,LOC107683262,LOC107730870 coding upstream 394675 11296569 ~ 11303882 (+)
vwde vwde coding downstream 21581 11732929 ~ 11767714 (+)
LOC103026019 lsr,LOC108427013 coding downstream 79683 11791031 ~ 11805598 (+)
LOC103031217 mag,LOC108427016,LOC108277883,LOC107752306,LOC107683144,LOC107587088,LOC107704773 coding downstream 98827 11810175 ~ 11843921 (+)
LOC103031523 NA coding downstream 140554 11851902 ~ 11872341 (+)
LOC103026933 LOC108426918 coding downstream 165578 11876926 ~ 11880070 (+)
LOC111192815 NA non-coding upstream 67726 11629286 ~ 11630831 (+)
G2979 NA non-coding upstream 70778 11626598 ~ 11627779 (+)
G2969 NA non-coding upstream 86258 11574951 ~ 11612299 (+)
G2970 NA non-coding upstream 161946 11524645 ~ 11536611 (+)
G2918 NA non-coding upstream 385949 11312381 ~ 11312608 (+)
G2983 NA non-coding downstream 20174 11731522 ~ 11754111 (+)
LOC111196183 NA non-coding downstream 246727 11958075 ~ 11958465 (+)
G3129 gbe1 non-coding downstream 395043 12106391 ~ 12109036 (+)
G3179 NA non-coding downstream 535629 12246977 ~ 12252612 (+)
G3205 NA non-coding downstream 865732 12577080 ~ 12658307 (+)
meox2 meox2,LOC103024054,LOC107683451,LOC107730826,LOC107582293,LOC107588208,LOC107704718 other upstream 274106 11405543 ~ 11424451 (+)
G2910 sarm1,LOC107756984 other upstream 409711 11288131 ~ 11288846 (+)
LOC103029949 slc46a1 other upstream 419380 11258446 ~ 11279177 (+)
LOC103039705 gdpd5b,gdpd5,LOC103039705,LOC108433002,LOC108277648,LOC107666190,LOC107682503 other upstream 1955066 9634093 ~ 9743491 (+)
G2509 NA other upstream 2028432 9631865 ~ 9670125 (+)
G3096 NA other downstream 213102 11924450 ~ 11927250 (+)
G3313 sept5b,LOC108425237 other downstream 1271277 12982625 ~ 12984269 (+)
LOC103035587 NA other downstream 2506459 14217807 ~ 14244380 (+)
LOC103039352 nova2,LOC103039352,LOC108440380,LOC108277822,LOC107669728,LOC107589717,LOC107756760,LOC107379798 other downstream 2733210 14444558 ~ 14505015 (+)
LOC107197063 capns1,LOC108425806,LOC105901516,LOC107700232,LOC107548486 other downstream 3128945 14840293 ~ 14845626 (+)

Expression


Co-expression Network