G3232


Basic Information

Item Value
gene id G3232
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 12714618 ~ 12720840 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU4240
CTTGTGATGAGGCTAGCATAGAATGCTCATCACCAGTAGCAGTGTAATGCGTACCTTTTATTATCTGTCTGTAATACTTACCTGTAATGGGATGGCTCACTTCGGGGGGTAGGCCGTAGGGCCCACGGCTTATTCTGCTTGGGGGGGGGGAGTCCAGGAATCCTATTTTGAAAGCATAAGCTTGTAAGTGTACATATTTAAGTTTAACCGGTTTATAATGTTATCAgctgattttttaaaagaaactcACTTTGACCCACCTAAATGGGTTAGCTCACCTTGAGGATGGTTTGGTCCACATAGGGGGTGGGGCGAGACCCATAAGAAGGGCGGGAAAGGGGTTGCTGGGGGGCTCTGAGGTACTCACCTGTTGCTGCAGCAGAAGCACAGATCATTGAGTTAGAGCTGTGAGAAATGTAGCCTACTGCTTTTAGTCAGGCAACCATTTAATCCGTTTTGTTtctgtatatactgttttttttatatatatatattttttttttgcacgtgTAAATAAAAGTTTCACTGCATGGATTGGATCTGCTGCTTCAGCTTGGTTCCTGTTCCCATACACCCACTGCTGGTCTGCACTACCCGGTGACTTCGTGTCTCCCTACACGGGAGTTCGGCGAGCATCGTcacaatgctctaaatgactattttatttggaatttaggagaaatgttgtctgtagttcatagaataaaacaacaatgttcgtttactcaaacatttacctataaatagcaaaatcagataaactaattcagaaaatgaagtggcttgccttttttccagagctgtataaaagaATATTTCAATAGACTATATGCAGTACTTGCTCTTGTCCATCATATAACACCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU4240 True 864 lncRNA 0.46 2 12714618 12720840

Neighbor

gene id symbol gene type direction distance location
mipep mipep,LOC107724959,LOC106581117 coding upstream 45849 12641165 ~ 12668769 (+)
LOC103047626 LOC103047626,LOC108426971 coding upstream 76359 12623464 ~ 12638259 (+)
LOC103046499 cadm2,cadm2b,LOC103046499,LOC108426969 coding upstream 112082 12288119 ~ 12602536 (+)
LOC103027225 NA coding upstream 804087 11884302 ~ 11910531 (+)
LOC103026933 LOC108426918 coding upstream 834548 11876926 ~ 11880070 (+)
trappc4 trappc4,LOC107561742,LOC106612982 coding downstream 68061 12788901 ~ 12793303 (+)
LOC103023132 LOC108426979,LOC108278227,LOC107567275 coding downstream 282697 13003537 ~ 13028805 (+)
LOC103023447 LOC108426981,LOC108278228,LOC107380297,LOC103474627,LOC102221837,LOC107746191 coding downstream 313640 13034480 ~ 13042611 (+)
LOC103022831 rab4b,LOC103022831,LOC108426982,LOC107567272,LOC107592649,LOC103378089,LOC107699834,LOC100706225 coding downstream 403942 13124782 ~ 13150184 (+)
arhgap35 arhgap35,LOC107670284,LOC107726507,LOC107699836,LOC107574404 coding downstream 465281 13186121 ~ 13330297 (+)
G3205 NA non-coding upstream 56311 12577080 ~ 12658307 (+)
G3179 NA non-coding upstream 462006 12246977 ~ 12252612 (+)
G3129 gbe1 non-coding upstream 605582 12106391 ~ 12109036 (+)
LOC111196183 NA non-coding upstream 756153 11958075 ~ 11958465 (+)
G2983 NA non-coding upstream 960507 11731522 ~ 11754111 (+)
LOC111197033 NA non-coding downstream 268745 12989585 ~ 12992123 (+)
G3323 NA non-coding downstream 278205 12999045 ~ 12999446 (+)
G3342 ap2s1 non-coding downstream 354757 13075597 ~ 13205546 (+)
G3377 tmem160 non-coding downstream 742255 13463095 ~ 13464950 (+)
LOC111188402 NA non-coding downstream 746833 13467673 ~ 13492977 (+)
G3096 NA other upstream 787368 11924450 ~ 11927250 (+)
meox2 meox2,LOC103024054,LOC107683451,LOC107730826,LOC107582293,LOC107588208,LOC107704718 other upstream 1290167 11405543 ~ 11424451 (+)
G2910 sarm1,LOC107756984 other upstream 1425772 11288131 ~ 11288846 (+)
LOC103029949 slc46a1 other upstream 1435441 11258446 ~ 11279177 (+)
LOC103039705 gdpd5b,gdpd5,LOC103039705,LOC108433002,LOC108277648,LOC107666190,LOC107682503 other upstream 2971127 9634093 ~ 9743491 (+)
G3313 sept5b,LOC108425237 other downstream 261785 12982625 ~ 12984269 (+)
LOC103035587 NA other downstream 1496967 14217807 ~ 14244380 (+)
LOC103039352 nova2,LOC103039352,LOC108440380,LOC108277822,LOC107669728,LOC107589717,LOC107756760,LOC107379798 other downstream 1723718 14444558 ~ 14505015 (+)
LOC107197063 capns1,LOC108425806,LOC105901516,LOC107700232,LOC107548486 other downstream 2119453 14840293 ~ 14845626 (+)
G3736 NA other downstream 2240333 14961173 ~ 14963583 (+)

Expression


Co-expression Network