G3323


Basic Information

Item Value
gene id G3323
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 12999045 ~ 12999446 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU4352
aaaatgttaaaactgatatcgcaattcatctttatttacaacattcttaagcattacaatttagaaatgttaaataatatttaccacTTAATTACCACTTAATGTTTATTACAgtcgtaagtactgttattttttacccTGATTGTAAAGAGTTACAGATGCATCAGTAGCTGGGTAGAACAATATGAATATGACTGctgtctaaataaattaaaaaggcattttttttacGGCAGCCTCACGCTGACACAGGGTCCCAAGCAGTGAtgttagtaacgcgttactctaatctgactcttttttcagtaacgagtaatctaacgcgttactatttccaatgcagtaatcagattaaagttacttatccaagtcactgtgcgttactctcgctctctctctctc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU4352 True 402 lncRNA 0.44 1 12999045 12999446

Neighbor

gene id symbol gene type direction distance location
trappc4 trappc4,LOC107561742,LOC106612982 coding upstream 205742 12788901 ~ 12793303 (+)
sacs sacs,LOC107670382,LOC107724954 coding upstream 245145 12708209 ~ 12753900 (+)
mipep mipep,LOC107724959,LOC106581117 coding upstream 330276 12641165 ~ 12668769 (+)
LOC103047626 LOC103047626,LOC108426971 coding upstream 360786 12623464 ~ 12638259 (+)
LOC103046499 cadm2,cadm2b,LOC103046499,LOC108426969 coding upstream 396509 12288119 ~ 12602536 (+)
LOC103023132 LOC108426979,LOC108278227,LOC107567275 coding downstream 4091 13003537 ~ 13028805 (+)
LOC103023447 LOC108426981,LOC108278228,LOC107380297,LOC103474627,LOC102221837,LOC107746191 coding downstream 35034 13034480 ~ 13042611 (+)
LOC103022831 rab4b,LOC103022831,LOC108426982,LOC107567272,LOC107592649,LOC103378089,LOC107699834,LOC100706225 coding downstream 125336 13124782 ~ 13150184 (+)
arhgap35 arhgap35,LOC107670284,LOC107726507,LOC107699836,LOC107574404 coding downstream 186675 13186121 ~ 13330297 (+)
npas1 npas1 coding downstream 384531 13383977 ~ 13455473 (+)
LOC111197033 NA non-coding upstream 6922 12989585 ~ 12992123 (+)
G3232 NA non-coding upstream 278205 12714618 ~ 12720840 (+)
G3205 NA non-coding upstream 340738 12577080 ~ 12658307 (+)
G3179 NA non-coding upstream 746433 12246977 ~ 12252612 (+)
G3129 gbe1 non-coding upstream 890009 12106391 ~ 12109036 (+)
G3342 ap2s1 non-coding downstream 76151 13075597 ~ 13205546 (+)
G3377 tmem160 non-coding downstream 463649 13463095 ~ 13464950 (+)
LOC111188402 NA non-coding downstream 468227 13467673 ~ 13492977 (+)
G3381 NA non-coding downstream 482603 13482049 ~ 13485913 (+)
G3388 pitpna,pitpnaa,LOC107743636,LOC107669737 non-coding downstream 527761 13527207 ~ 13541209 (+)
G3313 sept5b,LOC108425237 other upstream 14776 12982625 ~ 12984269 (+)
G3096 NA other upstream 1071795 11924450 ~ 11927250 (+)
meox2 meox2,LOC103024054,LOC107683451,LOC107730826,LOC107582293,LOC107588208,LOC107704718 other upstream 1574594 11405543 ~ 11424451 (+)
G2910 sarm1,LOC107756984 other upstream 1710199 11288131 ~ 11288846 (+)
LOC103029949 slc46a1 other upstream 1719868 11258446 ~ 11279177 (+)
LOC103035587 NA other downstream 1218361 14217807 ~ 14244380 (+)
LOC103039352 nova2,LOC103039352,LOC108440380,LOC108277822,LOC107669728,LOC107589717,LOC107756760,LOC107379798 other downstream 1445112 14444558 ~ 14505015 (+)
LOC107197063 capns1,LOC108425806,LOC105901516,LOC107700232,LOC107548486 other downstream 1840847 14840293 ~ 14845626 (+)
G3736 NA other downstream 1961727 14961173 ~ 14963583 (+)
G3790 NA other downstream 2039109 15038555 ~ 15038914 (+)

Expression


Co-expression Network