G3377 (tmem160)


Basic Information

Item Value
gene id G3377
gene name tmem160
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 13463095 ~ 13464950 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU4436
CGCTCCAAAAGTGATTTGTCCCCATATTGCGAGTACTGTATTAAGCACTGCTCGTTTATTTTCGGTACCATGGCCTGTTTTCACTTATGCACAGACTGAAAAACTAAGAATACTCCTATTAAAGAGTATACATTGACTGAGAAATATGAATATTGAGctaaaatccacatctctatcagatttcttaatcagatttttatacCTTTCTCCGGTCTATGAAATCATAGTACTGGTATGTTGTTTTGAGTGGATGATTGACTgcatgtaaattaaattactgaaCTGATTTGAGACTTCTCTGATTTTATGGCGTTGAGTGGCTGAAGCTGTACATATAAACTACGAATAGGGTTAGGGCTCTCGCTCTATAAACGCAACATGTCTCTCTTTTCTGCACATCCTATTCAAACATGCAGCAACACTACAACTGTAAAGAAGTTTGAAACTGGAACAACAAATATAAATGGAACATCCCTTTACACAGAAAGGTCAAGTCGTCAACTTTGATTTAAAACAGCTTTTCATGTTttatacacaaaacacacagattccCAATGGCCTTGAACCTCATGAACCAATGAGCAATGAAGACAGATCATTTTATAGTACAACAGACCCCACCCAATCCCAAACGTCTCTAGAACATGAACCAGCATAGGCAACTTCTCGATTGCCACTGATGTGATCTTTTCTCCAGCTGGTCTCAGAACAgtttgcatttatatttatgaataAGATGCAGGTACAGAAAGCTGGTCCTGGACCAGTGCTCAAGCAGCACAGgacttctcttctctctcttctctctctttttctctctctctctctcattcactctcacTCCGTTACTTGTCCTGGCCTCTCTCATCCGTGTGGTGTCTGTCTCGCCGAGCCCTGCACTCTGCACATTCGCCACCTTCATCCCCACCCTCCTCATCCTCGTCCTCATCCCGGATGATCTCCACTTCAAGGCGGCCGATGTAGAGGGATACCGCACACAGCCAGAAGAGGGCGACGCTGGACACCACAGCAGTGTGGAGCAGTGCAGCCGGCAGAGAGATCAGCATGATTCTTCTTAGGGTCAGCAAGCTGCCCACGTAAGACGCCCCACCAAacgacacacacactcctccaagGACGAAAAAAACCATATCCTGCTTCTCTTCCCACGTCACTCTGTACAAAGGCAATGACTCCAATCCCAGTAGCC

Function

symbol description
tmem160 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM160 (transmembrane protein 160).

NR:

description
PREDICTED: transmembrane protein 160

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU4436 True 1210 lncRNA 0.36 2 13463095 13464950

Neighbor

gene id symbol gene type direction distance location
npas1 npas1 coding upstream 7622 13383977 ~ 13455473 (+)
arhgap35 arhgap35,LOC107670284,LOC107726507,LOC107699836,LOC107574404 coding upstream 132798 13186121 ~ 13330297 (+)
LOC103022831 rab4b,LOC103022831,LOC108426982,LOC107567272,LOC107592649,LOC103378089,LOC107699834,LOC100706225 coding upstream 312911 13124782 ~ 13150184 (+)
LOC103023447 LOC108426981,LOC108278228,LOC107380297,LOC103474627,LOC102221837,LOC107746191 coding upstream 420484 13034480 ~ 13042611 (+)
LOC103023132 LOC108426979,LOC108278227,LOC107567275 coding upstream 434290 13003537 ~ 13028805 (+)
prpf8 prpf8,LOC107685080 coding downstream 198496 13663446 ~ 13678351 (+)
LOC103044209 rilp coding downstream 213719 13678669 ~ 13691891 (+)
scarf1 NA coding downstream 227216 13692166 ~ 13704422 (+)
LOC103043284 tspan13 coding downstream 250222 13715172 ~ 13721065 (+)
LOC103039353 LOC108440382 coding downstream 707114 14172064 ~ 14213314 (+)
G3342 ap2s1 non-coding upstream 257549 13075597 ~ 13205546 (+)
G3323 NA non-coding upstream 463649 12999045 ~ 12999446 (+)
LOC111197033 NA non-coding upstream 470972 12989585 ~ 12992123 (+)
G3232 NA non-coding upstream 742255 12714618 ~ 12720840 (+)
G3205 NA non-coding upstream 804788 12577080 ~ 12658307 (+)
LOC111188402 NA non-coding downstream 2723 13467673 ~ 13492977 (+)
G3381 NA non-coding downstream 17099 13482049 ~ 13485913 (+)
G3388 pitpna,pitpnaa,LOC107743636,LOC107669737 non-coding downstream 62257 13527207 ~ 13541209 (+)
G3390 NA non-coding downstream 79500 13544450 ~ 13552415 (+)
G3397 NA non-coding downstream 116326 13581276 ~ 13583208 (+)
G3313 sept5b,LOC108425237 other upstream 478826 12982625 ~ 12984269 (+)
G3096 NA other upstream 1535845 11924450 ~ 11927250 (+)
meox2 meox2,LOC103024054,LOC107683451,LOC107730826,LOC107582293,LOC107588208,LOC107704718 other upstream 2038644 11405543 ~ 11424451 (+)
G2910 sarm1,LOC107756984 other upstream 2174249 11288131 ~ 11288846 (+)
LOC103029949 slc46a1 other upstream 2183918 11258446 ~ 11279177 (+)
LOC103035587 NA other downstream 752857 14217807 ~ 14244380 (+)
LOC103039352 nova2,LOC103039352,LOC108440380,LOC108277822,LOC107669728,LOC107589717,LOC107756760,LOC107379798 other downstream 979608 14444558 ~ 14505015 (+)
LOC107197063 capns1,LOC108425806,LOC105901516,LOC107700232,LOC107548486 other downstream 1375343 14840293 ~ 14845626 (+)
G3736 NA other downstream 1496223 14961173 ~ 14963583 (+)
G3790 NA other downstream 1573605 15038555 ~ 15038914 (+)

Expression


Co-expression Network