G3381


Basic Information

Item Value
gene id G3381
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 13482049 ~ 13485913 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU4446
ttctccattctttttctttttaaattgtcTATTGCATTTCAATCATCATGTTATACACATCACAAAGcaatttccatatatttttctctctcattcagacatcacatttttttttttgtacaataaaGTGCTTTGTTAATAACTTCTCTGACCATCTGCAAATACCCAACAATCTCAACACAGGACAGGCCACACCCACTCGCATGTGTGTATAGTCTGCTTTTGCAATAGTTAGTTATCTAGTCAATTCCAGACTAAAATCAATACAGTTCAAACCTTAAGAAACCAACTGGCCTTAATGTGACTCCAGAATCCAATGCTGCTCATAACATATAGTTATGTACTTATGAACATATGAACATGCATTTAGAAAAGTAACAAATCAGAATCTTGAACGTGGTCTCGAAGAATGATGACCAAAATGGAAACAGCCAAAAGACAATAGAACTACCACAGACAAGATACAGGTCACACACTTCTCCTGTATTTGCAATAGTTCCATCTATGGTAAACTAAAACTAAGGTTTtttagtgataatgtgatgCATATacttttctggaaaaaaaaaaaaaatccaaaatctattttaaattattgtgatcACCTTTATCAGCCAGTGGTGATGTTAAATGTTAGTTATTAAAATTTAATCATAAGACAGACTCCTTttagtttttactgtttctatgCTTTTGCCCAACTAATTCCAGTTGGTATTTAGACAAACTGCCACTACATACTGTATGGCCTAAGCTATATCCACACATATCCagatcttttaaaaaataaaagtttcattCCATACAGATACAAATGTTTGAACAAGCTAGCGAACACTGTATGGGGCTTAAAAAGGAGACATTAAAACACcaagcagaaagaaaaaaatttaatcctaaattacacactactcCCCAATTAGTGTACTATACAGGTCACAAAACAATTACAGATTCTTAATCTAAAGAGAGTATCAcacatatttgtaatattacagtatttacatttattcatgtGGAAATCTGAACTCATTGTGGTTATGACCTATGCAGTTTTTAAGGATATTGCGTAGGGAAGTGTTTTTAAACTtgtttccacaaaaaaaaaaaaaatctgccttgGAAAAAAACAACGATTTCATGTGAATGGGAGACAAAAACAGAGGAAAACTTCAGGTTTTTAAAAATACCCGGATATGTGTGGATGGGGCCTCATACTTATGAAAAGTTTGGGCATCTATGGTCAAACTACACATTTTGTTGAAGTGAACTCACAGTATAGTATCAATTCTACAGGaaacaaacttaaaatctaCTAATATGTCTAGGGATGCATGATGAAGTAGTACTGGATATCTGAATCAGCCCAGAAATCCCAgattggtgcatccctaaatatttctgcactttttaaagcacatttatcttctgtattttacatattgcaaaaatagaaaaacaaacaaattgaaATGTGCcatcactttttcacatttcacattattgtaatatgcttaattaagcaaataaacagtaattagGCTTCCAAATGTGCAGAATAAGTGAGTTCTCTGTAGAAAATCTGAATTAGTTTACACTTAATACCTTGTTATGTTCAACTATAAGGAACAGCAATAAATGTTCCCTGATCAAACtgacccggtgcatgtttaaccacattaaacaatatatacccctatctggacaggattagtttctcagggggtcctggggtaattttctcctTTATTTGGGGgattctctgtgattttattcccgtccggaacaaCTGTGCATAtgttttttctcagatgtcgtctaaaaaaaaattacaggctaaattaccaactgtttttcactgcattctgtggtcctccagtaattttagtcctgttcgGATgtacatctctgagtttgtctacTGCCATGCGCCCTAATTACACTTTGGATGCGCGTTTCCactgagtggaaatggaggagctactgaacacgatgtcatgtgacagagaaagcctaaaaactcactggtcctcctgttttttcaattgcagtccagatgcaagtgttttattactgagtagaagtgtgaaatatttttcacatatgtccccctgaaaaactaatcctgtctggatagggcttaagacatATTTTGTGCATTCCTTGCAGATCATGGTTTATTTATGATAATTTAAGGCATGCCTtattcagaaaatatatatatttttaatttatcctttttttctgaattgAATGTTTATCACACACCCTGTTTGTTTGCTTAACCCACAACATAACaggactgtttaaaaaaaaacacaaatgtgtaATTTGACCAGGTTACCCAACTTTTGCagttgtttgttggtttgtagGTGTTGCATCTTTATCCTGACAGTTTTATTTACCCCGGTTCCATATTCACTTCAGTTCCTCTACTATTCTGCATTTGAACATGCAGCGCCTTCTTGGAAACATAGGCACAAGGATAGAGCGGCTAGTCTAGAGTCCTAGCAGAGAAACAGCAGATGTTCGTTTTCTGTGCTGACCTGATGAGCTTAAGCACTGAAGAATAAGCCATATTTGTTTAGACTATAGGAATAAGAAACAGTCAGCTCACTATTTCTGAAGATGACTCAGGCAAGTGCATCACCATGAAGTCTCGAGGAGAGACCTATTAAAGGCATACTAGCATAGATCTGTTTCAAACTTCACTTCGTCTGTGCTTCCTAACGAGAACAGAAGGCCATTTAGTTTGTTACATTTGTTACAGGCAAGGGTAGGCCATGATAGACTAGCTAAAATTCTcacttgataaaacacacacacatatgcccacacgcacacatacacacaaataaaaaaggtcACATTCAGCGAACCCTGTTTTGACCCTCCTGCTGTACTCCTGTGGTAATGTGTTCTCCAGGTTATACACACTTGGGGTGTATTAGTGGAGGCATGCTTGACCGTGAATGCTCTGATCTGAGTTGATGGGATGTTTGGGCAACTGTCTAAGCTTTTGCTCTCAGTACCAGCAGTCTTAAGGTTCTGTGCACACTCTGAAATGTCTCCAAACCTTGCCAGAtactgtgttttagtcaggtgTCAATCTAGGtgtagttaatttatttttcatttgtttaatcGGTAGTGCTCCCCATTAACACTGTTCCCTTATTGAGGCTATGATATGGTTAGGACAAAGTCTGCTGAGGTCTTgttccttttcttctcttctccttccATTCTGGTAGAGTCACAGCTGTATTCTCCGTAAGGACATGCTAATACTTATTATATAAGGAGCATGTGTGACCAGAGAGAAGCTTATTTCTTACTAttcaacaaataaaagaaaacagtacTTAATACAAAGAGGCAAAAAGGTCCAATAACGGTCCTCTGGCAAACATTTTGGCATGTTCGTGTGAAGTGAGAAAAATCCACACGTTTTCAGCTTTTCAATCACGGCCAAGCTGTGTGTGACTGACAGAATCAGTGACCAATTCAATAGCGATCCTCCGTATATGCTCAGCATCCTCCCGGTCTCTCCGGCGGCCAACAGAGTCTCACCCAAGTGTCTGATTGGTTAGTCCGAGGTCTAGTCCGAGGAGTTGCCGGGATTGTCTGGCTGTATTGGCCTTAGCTGCCCATCATGCACTCTCTCCATGTCTCCCCTTGAAAACAGTTGTTCAGGTAACAGTGCGAGTAGGCACGTATTCGGAAGGACACACTGTGCTGCCCTGAGCTGGTGAGATTTTAGGTGTTGTTGCTTTGAGAAACCCGTACCTCCACCCCTTTCTGTCC

Function

NR:

description
PREDICTED: cyclin-dependent kinase inhibitor 2A-like

GO:

id name namespace
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0019637 organophosphate metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0090407 organophosphate biosynthetic process biological_process
GO:1901135 carbohydrate derivative metabolic process biological_process
GO:1901137 carbohydrate derivative biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0006793 phosphorus metabolic process biological_process
GO:0006796 phosphate-containing compound metabolic process biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0016310 phosphorylation biological_process
GO:0034404 nucleobase-containing small molecule biosynthetic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU4446 True 3810 lncRNA 0.37 3 13482049 13485913

Neighbor

gene id symbol gene type direction distance location
npas1 npas1 coding upstream 26576 13383977 ~ 13455473 (+)
arhgap35 arhgap35,LOC107670284,LOC107726507,LOC107699836,LOC107574404 coding upstream 151752 13186121 ~ 13330297 (+)
LOC103022831 rab4b,LOC103022831,LOC108426982,LOC107567272,LOC107592649,LOC103378089,LOC107699834,LOC100706225 coding upstream 331865 13124782 ~ 13150184 (+)
LOC103023447 LOC108426981,LOC108278228,LOC107380297,LOC103474627,LOC102221837,LOC107746191 coding upstream 439438 13034480 ~ 13042611 (+)
LOC103023132 LOC108426979,LOC108278227,LOC107567275 coding upstream 453244 13003537 ~ 13028805 (+)
prpf8 prpf8,LOC107685080 coding downstream 177533 13663446 ~ 13678351 (+)
LOC103044209 rilp coding downstream 192756 13678669 ~ 13691891 (+)
scarf1 NA coding downstream 206253 13692166 ~ 13704422 (+)
LOC103043284 tspan13 coding downstream 229259 13715172 ~ 13721065 (+)
LOC103039353 LOC108440382 coding downstream 686151 14172064 ~ 14213314 (+)
G3377 tmem160 non-coding upstream 17099 13463095 ~ 13464950 (+)
G3342 ap2s1 non-coding upstream 276503 13075597 ~ 13205546 (+)
G3323 NA non-coding upstream 482603 12999045 ~ 12999446 (+)
LOC111197033 NA non-coding upstream 489926 12989585 ~ 12992123 (+)
G3232 NA non-coding upstream 761209 12714618 ~ 12720840 (+)
G3388 pitpna,pitpnaa,LOC107743636,LOC107669737 non-coding downstream 41294 13527207 ~ 13541209 (+)
G3390 NA non-coding downstream 58537 13544450 ~ 13552415 (+)
G3397 NA non-coding downstream 95363 13581276 ~ 13583208 (+)
G3431 LOC108427003,LOC107582235,LOC107730853 non-coding downstream 261572 13747485 ~ 13750325 (+)
G3501 NA non-coding downstream 641449 14127362 ~ 14128856 (+)
G3313 sept5b,LOC108425237 other upstream 497780 12982625 ~ 12984269 (+)
G3096 NA other upstream 1554799 11924450 ~ 11927250 (+)
meox2 meox2,LOC103024054,LOC107683451,LOC107730826,LOC107582293,LOC107588208,LOC107704718 other upstream 2057598 11405543 ~ 11424451 (+)
G2910 sarm1,LOC107756984 other upstream 2193203 11288131 ~ 11288846 (+)
LOC103029949 slc46a1 other upstream 2202872 11258446 ~ 11279177 (+)
LOC103035587 NA other downstream 731894 14217807 ~ 14244380 (+)
LOC103039352 nova2,LOC103039352,LOC108440380,LOC108277822,LOC107669728,LOC107589717,LOC107756760,LOC107379798 other downstream 958645 14444558 ~ 14505015 (+)
LOC107197063 capns1,LOC108425806,LOC105901516,LOC107700232,LOC107548486 other downstream 1354380 14840293 ~ 14845626 (+)
G3736 NA other downstream 1475260 14961173 ~ 14963583 (+)
G3790 NA other downstream 1552642 15038555 ~ 15038914 (+)

Expression


Co-expression Network