G3515 (LOC108440363)


Basic Information

Item Value
gene id G3515
gene name LOC108440363
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 14157586 ~ 14168960 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU4631
CTGGCACCACACCGTTAGTTGCGATGGCACTCATTGATATTGCTGTAAGAAGAGTacaaacacagcacataAAAACAATGGCAAAGGAACCCAAGATTCCAGCCGTGCCCACGATCCACGTCAGACGGAGGAAGAGAATTACACCCAAGATGTTCTGCATACAGGGCAGATACACTCCGATAAACGTGCCCATCTGAGGGccCCTGATGGTGACCTTTTTAACTCCATCCTCACTCTCAGCTTTCTCATGATCTATGACTCCCTGTGTCAGGTTGGTGTAATTAGCCAGTTTGTTGAGAAGGGCTGACACCATTGGAGTGCTGTCCATTTCTTCCTCAAACAGCGCCATGTTCTTCCCATCACAGCTCCCCTCATGGTCACCAGTGGTAATAAAGGGACTGTCCTCACCAGGGGTTTCCTCTCCTGAGTAAAGTCCAGGCTTCTCCTCATCTTCACCTTCGGGGCTCTGAACGTCACTGTCTGGACTTGAAGGCTGACCATCTTCCACCGGCACCACTGTGAAGTTGGTGGGCATTTTTCCTTCACGACATGTGCTCCTAGTATGTGTGAGAGACACTTTGTTTcccttttctctccctccttccctcgctctctctttctctctctctttcacacacactcacttcca

Function

NR:

description
PREDICTED: coronin-2A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU4631 True 649 lncRNA 0.73 6 14157586 14168960

Neighbor

gene id symbol gene type direction distance location
LOC103043284 tspan13 coding upstream 436521 13715172 ~ 13721065 (+)
scarf1 NA coding upstream 453164 13692166 ~ 13704422 (+)
LOC103044209 rilp coding upstream 465695 13678669 ~ 13691891 (+)
prpf8 prpf8,LOC107685080 coding upstream 479235 13663446 ~ 13678351 (+)
npas1 npas1 coding upstream 702113 13383977 ~ 13455473 (+)
LOC103039353 LOC108440382 coding downstream 3104 14172064 ~ 14213314 (+)
ankrd13b ankrd13b coding downstream 114661 14283621 ~ 14327119 (+)
LOC103041611 gipr,LOC107714193,LOC107548593,LOC107756746,LOC107685094,LOC106580753 coding downstream 502552 14671512 ~ 14705719 (+)
clip3 clip3,LOC107714192,LOC107685098,LOC107548591,LOC107669746 coding downstream 562147 14731107 ~ 14753636 (+)
LOC103042749 NA coding downstream 597854 14766814 ~ 14802961 (+)
G3509 NA non-coding upstream 12895 14144201 ~ 14144691 (+)
G3507 NA non-coding upstream 14683 14141220 ~ 14142903 (+)
G3502 NA non-coding upstream 25910 14130437 ~ 14131676 (+)
G3501 NA non-coding upstream 28730 14127362 ~ 14128856 (+)
G3431 LOC108427003,LOC107582235,LOC107730853 non-coding upstream 407261 13747485 ~ 13750325 (+)
G3524 NA non-coding downstream 78752 14247712 ~ 14247978 (+)
LOC111190024 NA non-coding downstream 80883 14249843 ~ 14255637 (+)
G3537 NA non-coding downstream 143248 14312208 ~ 14471752 (+)
LOC111190477 NA non-coding downstream 195505 14364465 ~ 14369107 (+)
G3561 blmh,LOC107743628 non-coding downstream 245329 14414289 ~ 14435581 (+)
G3313 sept5b,LOC108425237 other upstream 1173317 12982625 ~ 12984269 (+)
G3096 NA other upstream 2230336 11924450 ~ 11927250 (+)
meox2 meox2,LOC103024054,LOC107683451,LOC107730826,LOC107582293,LOC107588208,LOC107704718 other upstream 2733135 11405543 ~ 11424451 (+)
G2910 sarm1,LOC107756984 other upstream 2868740 11288131 ~ 11288846 (+)
LOC103029949 slc46a1 other upstream 2878409 11258446 ~ 11279177 (+)
LOC103035587 NA other downstream 48847 14217807 ~ 14244380 (+)
LOC103039352 nova2,LOC103039352,LOC108440380,LOC108277822,LOC107669728,LOC107589717,LOC107756760,LOC107379798 other downstream 275598 14444558 ~ 14505015 (+)
LOC107197063 capns1,LOC108425806,LOC105901516,LOC107700232,LOC107548486 other downstream 671333 14840293 ~ 14845626 (+)
G3736 NA other downstream 792213 14961173 ~ 14963583 (+)
G3790 NA other downstream 869595 15038555 ~ 15038914 (+)

Expression


Co-expression Network