LOC111190024


Basic Information

Item Value
gene id LOC111190024
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 14249843 ~ 14255637 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU4663
AGGACAATTAACCTTTTCTGTCTTTATTACAAATGTACAGTTTACGAGTTTCTATTATGATTCCGCCGTTTTTGCttagttgtttattttatacagtttaactCTAAAAGAAATTCTCCCATCAGCAATCTCAGAACAGTCATTACGAGTACAGTGCAGTGAGTTGGACTGAACTGAAGAAGAGACTACGCAAGAGTAGGTCGTGGATGCTCGTCtgtgtgcatgtctgtgtgAATGTGAAAACTTGGTTCATGTGTGCATTGACTGCTTGATGGCATGAGGCTGCATGGGACAAAGGCAGACATTAAGCTTCTACAATTTACAACCAAAGGAGCCCAACATTGTGCTGGATAGATCATGAAGTCGGTACGTGCAAAGGCTCCTGCTCTCCCAACACAGGCTTAGGGCCTACCTCCccatctctcctcttctctcagtTTGGTGCTATAACCTCTTGGGTTCTCCCAATGTATAACAACGgtcacaaaaataaacaactggGTAAAACATCTCCCAAGAACCACCAATTTACAACCAAAGGAGCCCAACATTGTGCTGGATAGATCATGAAGTCGGTACGTGCAAAGGCTCCTGCTCTCCCAACACAGGCTTAGGGCCTACCTCCccatctctcctcttctctcagtTTGGTGCTATAACCTCTTGGGTTCTCCCAATGTATAACAACGgtcacaaaaataaacaactggGTAAAACATCTCCCAAGAACCACCATTTAACAACACCATTAAGCCCTGCAAAGAGGCTATTTTACCTTAGAACTTGTGCTACACAGAGTGAGAGGTCAAAGAAGATGGAAGAAATGGCAACTATCAAGACAACAGATGCTACAGAGAATCAGTCTGGTAGAGATGTGCAAAGGCAATGATCACAGATTCTCTCAGACAATCTTTTTGACACATTTAGAAGGGAAATGTATCATCTCATTTCCCTCAATGCAAAAAAGGCAAGTGTCTGTAGTGGATAAAGTTGACATGGATAAATTAACAATGTAAGAAATAACCAAGGTAAAAATAATTGCAACTGAGGAACTTTAAGGCTTATGCTGTAGCAACGGAAACATATGAAAGCATCTGTTTAACACTAAAATAGCACTGATGACACATGTGAGTGAAGCTGTTGTGACTAGACAAGTGTAGGTTGGTGGTTCTCATAATGTGGACCAACTGGAAGGCCCTGAGGACTGGTTTAAGAACCACATGTGTAGACAGTAAGGGCTAGACATTTCATTTGAAATGTGAATGTAGTCCAAACGGAAGCATTTCCATTCAATTTTTTTCAGACAGGACTGTGTGAACAACTTGTGGCCTCTGGCTGTCTAAATAAATGAAACGTCAGGCTGATGAACATGGTGTTTAGATTAAGTAGTGCTCAGCTTGTCCACGCTATCACAGCTCTTCAGTTCATCACCACCCCCACAAACATCATTAAAAGCAGGCTACTTCTCTGTTAAAATCAGTGGGCTGTGCTAAGAGCTGTTCAAAAGTATCCTGCAGTcccccgctgctgctgctgcccccGCTACAGTTTCACCCACACTGGCTTCACTGCTCCTGGATCCACTATGGGAGAGCTTTACACAGAACAGCAGCTCAGTTTTttctCATTACTGTAACCTGCTGAAGTGCCTTGGAGGAGAACGTTGATGGTGATGGTCTTCAACCGGCAACATTCACTTCCTTGTAGCTTATATAAACGTAAGGGTCTTGTTACATTGACAGTAAATACACATGCTTTCCgataaagtaaaaacaaaagaaaaacgaaaaagaaaaaaaaaagaaaacatgagaCATACTATAAAAACCTGATATTCTCagagaagaaaaacaacaaatctgGTCCAGAAAAGAAGGGTTCAAAAACCGCAGTTCCctaccacactacactactaaGGACGTTGATTTGATGCTCTCAAAGAAAGTAAGATGCAAGAAGAGCTGGGAGGGAATCCGTCCAACCAAAGTGGAGCAATTTGCTTCTGAGGATGTAGTGAAAGAGCCACTATGGAGGAACAGTGATGAGATGGATGAATTGATCCGTCTCCTCATCTGGATGAGAGGCTAACTTACCTTCTTACATCGCTGTACACGGTTTTCTCAGTCAATGGTGTCAGTTGACGCTGTCTTTGTGCTCAAAAGGAGAGGGTAATCGCTACAGTGTTCCCCATATACCCCTCATTTTCCTTTGGCTATGATGAACGCAAGGgatttgtacacatagtgacaCATGTAGTGATCCTAACATGTTCCCCTAGAGTACAGGTGTGTTCTGTACTCAAAATGTCATGAAGACAGCCTCACAGATTTGTCAACTCCTCCAAAACTGTAAGGGCTGAGTGTCCCATTCAAAAACACTCCCCCATTTCATGACCCATAAGATAAATGAAATAACATAACATacataaacaacaaaacaaacaaaaaaaaaagaacataattAACAAAAGGCAGAAGAAACCATCAATGACACTGATAATCATAACATTAATACAAAACTATAGTCATAATCATTACAATAAATTCCAGTgtaagtgttttgtttttaagtcTGAGCATTTGTCCCGAGAGGTATGGGCCAGTGGAGTGgcattcaagaaaaaaaaaatgaagatggaACAAGAAGGAAGagtaagaactttaaaaaggaaaaaaaaaataaaggatgaGAAAgtgaggagaaaaaaggcaaaagacaagtggggaaaaaaatacacatatagGTGCTAGAGGCTGTGATCTGGTTCTCCCGGACTAGGCTGAGAGTGTGCTGTATAcacttgtttgtttgtgtgtgtgcgtgtgtgcgctAGTGTTGAATGAGCATGTGAATGTGAAAGAGAACCAGAGGAGCAGCAGTGAGTGTGTTATAAGGCCACAAGCACCGACctgtgtgtgtaggtatgtATAAGAGTGTGTATTCGTATTTGTGTGTGAGAAGGATGTGAGAATGGAAGGAGTATTTGAGTGAAGGAAGGTAGTGTAGGTAAAGAAAGATCCCAATAACAGAAGAAAAGTCAGAGATGGAGTGAGATGATTTGCCGCTCCAAAAATGGGCCTTTCACCAAGCCACCCTCTCTCCTCATATTGGTGGTGACGGCTGCTTgaagctttctttctttctccttttccgTTCGCTGTCTTTTTGCCACTATTCCTTTCATGCtttctttcatttcattcatcTTTCCCTACATTCAACATCCATGTGCTTTGTTTCCATTGCTCTTTTCATTCAGAATTTCACAGCAGTGCCCTCTGTTTGCttctagtctttttttttttcttttttttttaaccaccaGTATGCCAACTCCTGTCCCGTTTCTGTAGTGCGTGCCCATGCCTGTCTCTCATTAAGTACACATCCTGCTCATCCACTGGGTCACTGCTTCTTCTCGCGGGTGGTGATGGTGACCAGCTGTTTGGCGGCCTTGGCAATGTCATAAGCGCACTGGATGACCTGCTGGGTGAGGAGCTGGTAGTCCACTGTGCTGGCTGATGGTTCAGGGGGCGCTGCCTTGCGGCACTCCACCTGTAGCCGAGAGGCGCTTGCTGCCAGCAGCCTCAGAGAAGAGCGAACAGCGTCCAGCGCCG
>XR_002648994.1
AGGCAATGATCACAGATTCTCTCAGACAATCTTTTTGACACATTTAGAAGGGAAATGTATCATCTCATTTCCCTCAATGCAAAAAAGGCAAGTGTCTGTAGTGGATAAAGTTGACATGGATAAATTAACAATGTAAGAAATAACCAAGGTAAAAATAATTGCAACTGAGGAACTTTAAGGCTTATGCTGTAGCAACGGAAACATATGAAAGCATCTGTTTAACACTAAAATAGCACTGATGACACATGTGAGTGAAGCTGTTGTGACTAGACAAGTGTAGGTTGGTGGTTCTCATAATGTGGACCAACTGGAAGGCCCTGAGGACTGGTTTAAGAACCACATGTGTAGACAGTAAGGGCTAGACATTTCATTTGAAATGTGAATGTAGTCCAAACGGAAGCATTTCCATTCAATTTTTTTCAGACAGGACTGTGTGAACAACTTGTGGCCTCTGGCTGTCTAAATAAATGAAACGTCAGGCTGATGAACATGGTGTTTAGATTAAGTAGTGCTCAGCTTGTCCACGCTATCACAGCTCTTCAGTTCATCACCACCCCCACAAACATCATTAAAAGCAGGCTACTTCTCTGTTAAAATCAGTGGGCTGTGCTAAGAGCTGTTCAAAAGTATCCTGCAGTcccccgctgctgctgctgcccccGCTACAGTTTCACCCACACTGGCTTCACTGCTCCTGGATCCACTATGGGAGAGCTTTACACAGAACAGCAGCTCAttTTTTCCCATTACTGTAACCTGCTGAAGTGCCTTGGAGGAGAACGTTGATGGTGATGGTCTTCAACCGGCAACATTCACTTCCTTGTAGCTTATATAAACGTAAGGGTCTTGTTACATTGACAGTAAATACACATGCTTTCCgataaagtaaaaacaaaagaaaaacgaaaaagaaaaaaaaaagaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU4663 True 3617 lncRNA 0.54 2 14249843 14255637
XR_002648994.1 False 926 lncRNA 0.41 2 14250723 14253827

Neighbor

gene id symbol gene type direction distance location
LOC103039353 LOC108440382 coding upstream 36529 14172064 ~ 14213314 (+)
LOC103043284 tspan13 coding upstream 528778 13715172 ~ 13721065 (+)
scarf1 NA coding upstream 545421 13692166 ~ 13704422 (+)
LOC103044209 rilp coding upstream 557952 13678669 ~ 13691891 (+)
prpf8 prpf8,LOC107685080 coding upstream 571492 13663446 ~ 13678351 (+)
ankrd13b ankrd13b coding downstream 27984 14283621 ~ 14327119 (+)
LOC103041611 gipr,LOC107714193,LOC107548593,LOC107756746,LOC107685094,LOC106580753 coding downstream 415875 14671512 ~ 14705719 (+)
clip3 clip3,LOC107714192,LOC107685098,LOC107548591,LOC107669746 coding downstream 475470 14731107 ~ 14753636 (+)
LOC103042749 NA coding downstream 511177 14766814 ~ 14802961 (+)
LOC103043061 LOC108425915 coding downstream 559917 14815554 ~ 14822099 (+)
G3524 NA non-coding upstream 1865 14247712 ~ 14247978 (+)
G3515 LOC108440363 non-coding upstream 80883 14157586 ~ 14168960 (+)
G3509 NA non-coding upstream 105152 14144201 ~ 14144691 (+)
G3507 NA non-coding upstream 106940 14141220 ~ 14142903 (+)
G3502 NA non-coding upstream 118167 14130437 ~ 14131676 (+)
G3537 NA non-coding downstream 56571 14312208 ~ 14471752 (+)
LOC111190477 NA non-coding downstream 108828 14364465 ~ 14369107 (+)
G3561 blmh,LOC107743628 non-coding downstream 158652 14414289 ~ 14435581 (+)
G3575 NA non-coding downstream 255503 14511140 ~ 14512789 (+)
G3648 eml2,LOC108277999 non-coding downstream 337296 14592933 ~ 14594059 (+)
LOC103035587 NA other upstream 5463 14217807 ~ 14244380 (+)
G3313 sept5b,LOC108425237 other upstream 1265574 12982625 ~ 12984269 (+)
G3096 NA other upstream 2322593 11924450 ~ 11927250 (+)
meox2 meox2,LOC103024054,LOC107683451,LOC107730826,LOC107582293,LOC107588208,LOC107704718 other upstream 2825392 11405543 ~ 11424451 (+)
G2910 sarm1,LOC107756984 other upstream 2960997 11288131 ~ 11288846 (+)
LOC103039352 nova2,LOC103039352,LOC108440380,LOC108277822,LOC107669728,LOC107589717,LOC107756760,LOC107379798 other downstream 188921 14444558 ~ 14505015 (+)
LOC107197063 capns1,LOC108425806,LOC105901516,LOC107700232,LOC107548486 other downstream 584656 14840293 ~ 14845626 (+)
G3736 NA other downstream 705536 14961173 ~ 14963583 (+)
G3790 NA other downstream 782918 15038555 ~ 15038914 (+)
LOC103023550 nf1 other downstream 817203 15072840 ~ 15162956 (+)

Expression


Co-expression Network