G3537


Basic Information

Item Value
gene id G3537
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 14312208 ~ 14471752 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU4676
ttctATATGGTTTCTTATAACAGTCTTGTTGACATACATAGATCATAGATAGGTTTTATAAAGTACAATAGGagatttttgttactttttgatAGAAGCGTAAATTCCGGAGAGGAGGACTAGTTCGAGgcacacagcacaacacagtaTACATTCATTCATATCTGCATGcatacacacccatacacacacacacacacacagccacacacatttccacacacttacacacacactgacagaactatcCATGGCTTTGGGCTTCTCTACCTCGActtacagctctcacacacacttaaacacacacacacacacacacacacttcagaaaatacacacaaacactcaggcTCCTGTATATTCCCACTCAAAGAAGTCAACAGGTCGTCACAGGACTGCAACACACGAACAGCGAATACTCACAAAACAGATATGTACATACTTGTACTTTCAGTCAGAGTtagttatttgttgttttttttcaggaaaaacaataagaaaataaatgccTTGAGAGGGAATGTTGGTCAAGCAAATCAGTTTTTGCTTTCTGCTACATATGTCATTCACATATGATATGAAACACAAAGCAGGAGGGGCAGAGGAACACATGGTGTCTAGTTTTATaactgagacagacagacagacacacagacggATGCATTACAGAACAAAAgcttgaaaataaatatatgtcatACAGGTATAGTGTTCTGGTAACGGTAACATTACACACACGTTCCACACCGCCGTCTCAGTGTCAGTTACAgtctgaaaaaagagagagctcTAGAGACACTCCCTATAATAGCCATTCCTTAGAAATGCCTGTTAAAcagatgaacacacacacacacacacacacacaaacgcataCACGCACAaatgcatacacacatacaaaaacgCAAATGTGAACAAACACATTCACACCTGTGCAATAAAAAACCAAACCACATCAGGCACAACTCTTCTCTTAGGCTTCCTCCCAAAGCTTACTTTAAAGCACAAAAatgcattctctctctctctctctttctgtctctctctct
>TU4679
ttctATATGGTTTCTTATAACAGTCTTGTTGACATACATAGATCATAGATAGGTTTTATAAAGTACAATAGGagatttttgttactttttgatAGAAGCGTAAATTCCGGAGAGGAGGACTAGTTCGAGgcacacagcacaacacagtaTACATTCATTCATATCTGCATGcatacacacccatacacacacacacacacacagccacacacatttccacacacttacacacacactgacagaactatcCATGGCTTTGGGCTTCTCTACCTCGActtacagctctcacacacacacacacacacacacacttc
>TU4680
ttctATATGGTTTCTTATAACAGTCTTGTTGACATACATAGATCATAGATAGGTTTTATAAAGTACAATAGGagatttttgttactttttgatAGAAGCGTAAATTCCGGAGAGGAGGACTAGTTCGAGgcacacagcacaacacagtaTACATTCATTCATATCTGCATGcatacacacccatacacacacacacacacacagccacacacatttccacacacttacacacacactgacagaactatcCATGGCTTTGGGCTTCTCTACCTCGActtacagctctcacacacacttaaacacacacacacacacacacacacttcagaaaatacacacaaacactcaggcTCCTGTATATTCCCACTCAAAGAAGTCAACAGGTCGTCACAGGACTGCAACACACGAACAGCGAATACTCACAAAACAGATATGTACATACTTGTACTTTCAGTCAGAGTtagttatttgttgttttttttcaggaaaaacaataagaaaataaatgccTTGAGAGGGAATGTTGGTCAAGCAAATCAGTTTTTGCTTTCTGCTACATATGTCATTCACATATGATATGAAACACAAAGCAGGAGGGGCAGAGGAACACATGGTGTCTAGTTTTATaactgagacagacagacagacacacagacggATGCATTACAGAACAAAAgcttgaaaataaatatatgtcatACAGGTATAGTGTTCTGGTAACGGTAACATTACACACACGTTCCACACCGCCGTCTCAGTGTCAGTTACAgtctgaaaaaagagagagctcTAGAGACACTCCCTATAATAGCCATTCCTTAGAAATGCCTGTTAAAcagatgaacacacacacacacacacacacacaaacgcataCACGCACAaatgcatacacacatacaaaaacgCAAATGTGAACAAACACATTCACACCTGTGCAATAAAAAACCAAACCACATCAGGCACAACTCTTCTCTTAGGCTTCCTCCCAAAGCTTACTTTAAAGCACAAAAatgcattctctctctctctctctctctttctgtctctctctct
>TU4681
ctctctctctctctctctctctctctctctctctctccttttactttctctcccttactctttctttttctctcttttgtagGAGTTCCAAACCCAAACCATAAGCAGCTGCAAAGGTGTATTTGGATATTTTCGAAATATAACAGCAATAAATGTGATATCAAACTATTTTTGGTGTCATAAACATGTATACATGTGAGATCCACTTGATCTAACTTCAAATATTAATGTTATGTAGGTCAGTTATGGTAAAATCGATGGTGTTCTTATCATAGGTAATGGGTAATAATCCACCTGAAACAcagttatatactgtactataaagTATGTGATATAGTTCGCGAACTATGCATCGTTATTCACCCAAAATGGTATTTTGTGCTGCGAGACTCCAATCTTGAGATGTCTGGAAGAGAAGCTACGTATGCTTATGGGCAGGTACTAACTCACATGGACAACGAACACCGCCACATTTAGGAATGGTCAGAAACAAAGCAGCCAGGTTGCTGTAAGCGAAGGCCCAGCCCAGCCGCAGTACAGGTGGAGACTCCTTTGGCAGGTGAAGAGGTGTGTGTTTAGGGGAGGGGAGGGTGTCCCCACTTCTGCGGTTGTGCTACATGTCCAGCAGAGGGCAAGAGGTCCCCGACACCGGTCACACTGcgttggtgatgatgatgtcCCTGTGTGGGCCGCCGCTGCCCGGCGGCTCTGGAGTGATGCTCTTCAACAGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU4676 False 1052 lncRNA 0.50 2 14380750 14398843
TU4679 False 314 lncRNA 0.42 2 14380750 14471752
TU4680 True 1056 lncRNA 0.39 2 14380750 14398843
TU4681 False 732 lncRNA 0.55 2 14312208 14382477

Neighbor

gene id symbol gene type direction distance location
LOC103039353 LOC108440382 coding upstream 98894 14172064 ~ 14213314 (+)
LOC103043284 tspan13 coding upstream 591143 13715172 ~ 13721065 (+)
scarf1 NA coding upstream 607786 13692166 ~ 13704422 (+)
LOC103044209 rilp coding upstream 620317 13678669 ~ 13691891 (+)
prpf8 prpf8,LOC107685080 coding upstream 633857 13663446 ~ 13678351 (+)
LOC103041611 gipr,LOC107714193,LOC107548593,LOC107756746,LOC107685094,LOC106580753 coding downstream 199760 14671512 ~ 14705719 (+)
clip3 clip3,LOC107714192,LOC107685098,LOC107548591,LOC107669746 coding downstream 259355 14731107 ~ 14753636 (+)
LOC103042749 NA coding downstream 295062 14766814 ~ 14802961 (+)
LOC103043061 LOC108425915 coding downstream 343802 14815554 ~ 14822099 (+)
LOC103043366 LOC108425806 coding downstream 375431 14847183 ~ 14859409 (+)
LOC111190024 NA non-coding upstream 56571 14249843 ~ 14255637 (+)
G3524 NA non-coding upstream 64230 14247712 ~ 14247978 (+)
G3515 LOC108440363 non-coding upstream 143248 14157586 ~ 14168960 (+)
G3509 NA non-coding upstream 167517 14144201 ~ 14144691 (+)
G3507 NA non-coding upstream 169305 14141220 ~ 14142903 (+)
G3575 NA non-coding downstream 39388 14511140 ~ 14512789 (+)
G3648 eml2,LOC108277999 non-coding downstream 121181 14592933 ~ 14594059 (+)
G3787 NA non-coding downstream 563014 15034766 ~ 15035187 (+)
G3788 NA non-coding downstream 564190 15035942 ~ 15036582 (+)
trnae-uuc_1 NA non-coding downstream 574561 15046313 ~ 15046384 (+)
LOC103035587 NA other upstream 67828 14217807 ~ 14244380 (+)
G3313 sept5b,LOC108425237 other upstream 1327939 12982625 ~ 12984269 (+)
G3096 NA other upstream 2384958 11924450 ~ 11927250 (+)
meox2 meox2,LOC103024054,LOC107683451,LOC107730826,LOC107582293,LOC107588208,LOC107704718 other upstream 2887757 11405543 ~ 11424451 (+)
G2910 sarm1,LOC107756984 other upstream 3023362 11288131 ~ 11288846 (+)
LOC107197063 capns1,LOC108425806,LOC105901516,LOC107700232,LOC107548486 other downstream 368541 14840293 ~ 14845626 (+)
G3736 NA other downstream 489421 14961173 ~ 14963583 (+)
G3790 NA other downstream 566803 15038555 ~ 15038914 (+)
LOC103023550 nf1 other downstream 601088 15072840 ~ 15162956 (+)
LOC103040601 NA other downstream 1309886 15781638 ~ 15826103 (+)

Expression


Co-expression Network