G3840


Basic Information

Item Value
gene id G3840
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 15374631 ~ 15375643 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU5164
gtgtgagagagagctttattgtgtgtgtgtgctcttgtgtgtgtgtggtgtagccCATAACTCTTATTTATTTGTCTGGCTGTTGATTTGTAAGAGCATTGGTCTGTGTGATATCATTGCTTTGaaatatttagaaattatcaaaagCTGTCAGAattgaaatatgaatatttcaTACGGTGCCAGCTGGGATGTTTAGTTGCAATCAATAAATACAACCGATAGCTAGAGGGGAAACAAATGCATATTTTTCACAGCTGGAGCTTTTGATGGttgctgtgttttctctgtttagCCTTTCTCTGATCGGGCGGTGTTAACCTTACACCCCTGACATTCACCCGCATCATATTTAACCAGCGCCTGTTACTCACCTATTACAGTTCTGTGACAGATCACACAGCTTAACACACCATAATTCACACCAGGATTCACAAGATGTCTTTGTTGTTTTACTGCAAATCACAGTACTGAGTAGATCAGTTCTGAGTGTGGAGGGTTTCAGCACAGAATACCTAAAAACCAGATTGAGCCCAGGTTTCTCAGCAGGGTTAGATACTGTACTTGGGGGTTACAGGGCTGATCAATGGAAAGGTTTAATGACATTGGGacgagctgattggctggctaGGGCTTGCTAACACTATGGTAGGTTGGCAGCTATCATGTTAACAATGCTCCACCCCGCTTAATTAACGGTAGAGAAATTGGACGAGATTGGTAATGATGTGGCATCAGGCCAGGCTGATAGCCATCGTGCTAAAGCCacggtagtgatgttggatgagacTGGTAATGATATGtcat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU5164 True 807 lncRNA 0.43 2 15374631 15375643

Neighbor

gene id symbol gene type direction distance location
akap1 akap1b,akap1 coding upstream 188236 15167460 ~ 15186395 (+)
LOC103021895 NA coding upstream 308414 15051474 ~ 15066217 (+)
LOC103047124 ksr1 coding upstream 340972 14972989 ~ 15033659 (+)
wsb1 wsb1,LOC107756317,LOC107587373,LOC107682796,LOC107746651 coding upstream 419287 14940680 ~ 14955344 (+)
LOC103046311 cuedc1,cuedc1b,LOC107672109,LOC107587359,LOC107757269 coding upstream 435797 14906783 ~ 14938834 (+)
LOC103029544 NA coding downstream 333837 15709480 ~ 15729311 (+)
LOC111192347 NA coding downstream 355836 15731479 ~ 15774952 (+)
LOC103028185 NA coding downstream 357644 15733287 ~ 15762061 (+)
LOC103027482 NA coding downstream 514562 15890205 ~ 15892830 (+)
LOC103026903 aldh3a2a,LOC108425811,LOC107586255,LOC107729125,LOC107662794,LOC108277491 coding downstream 558865 15934508 ~ 15940392 (+)
G3825 NA non-coding upstream 84242 15288594 ~ 15290389 (+)
G3816 NA non-coding upstream 118732 15255457 ~ 15255899 (+)
G3800 NA non-coding upstream 239924 15120734 ~ 15134707 (+)
G3794 NA non-coding upstream 304829 15069430 ~ 15069802 (+)
trnae-uuc_1 NA non-coding upstream 328247 15046313 ~ 15046384 (+)
G3855 NA non-coding downstream 160847 15536490 ~ 15537243 (+)
G3808 NA non-coding downstream 241475 15617118 ~ 15619171 (+)
LOC111192011 NA non-coding downstream 263703 15639346 ~ 15655321 (+)
LOC111192856 NA non-coding downstream 284567 15660210 ~ 15664348 (+)
G3894 NA non-coding downstream 387601 15763244 ~ 15772504 (+)
LOC103023550 nf1 other upstream 211675 15072840 ~ 15162956 (+)
G3790 NA other upstream 335717 15038555 ~ 15038914 (+)
G3736 NA other upstream 411048 14961173 ~ 14963583 (+)
LOC107197063 capns1,LOC108425806,LOC105901516,LOC107700232,LOC107548486 other upstream 529005 14840293 ~ 14845626 (+)
LOC103039352 nova2,LOC103039352,LOC108440380,LOC108277822,LOC107669728,LOC107589717,LOC107756760,LOC107379798 other upstream 869616 14444558 ~ 14505015 (+)
LOC103040601 NA other downstream 405995 15781638 ~ 15826103 (+)
G4221 NA other downstream 1167299 16542942 ~ 16545854 (+)
G4219 ckm,ckmb,ckma,LOC107690449,LOC107683830,LOC107601735,LOC107743697,LOC107718278 other downstream 1243403 16619046 ~ 16623069 (+)
LOC103039709 NA other downstream 2634535 18010178 ~ 18012103 (+)
LOC103034503 efhd1,LOC103034503,LOC107669899,LOC107741634,LOC107585735,LOC107564379 other downstream 2665646 18041289 ~ 18422356 (+)

Expression


Co-expression Network