G3894


Basic Information

Item Value
gene id G3894
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 15763244 ~ 15772504 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU5273
TATGAATACTAATTATAATTGTTATATTCTAACATATAACATTTTGACAGTAAATGTAGTTCTGTTTGCTAGGTTGTCATATTTAATTAGTATTGTTATTTTACCTATTATATTTGGGGTCTCTTTGAACCCAGGCTGTTTTAGCAgtgtaaaacatataaaataatattagcaTTTTTCACACATTCGTTTTGGATAATGTGAAGGTCACTGTGACATGTATGACATTTTATAATCTTCAAACACAAATTTACAGCCCTTACATAACATAACCATTTTAAAAGCTATTTAAGTAGTCGACAAACAAACATAGCATATGAAATAAACgtaataattcattattttaattaatatataatttaaggtTAAAGTtgctggggtcaaattgaccccaatgATAAAAgattactaaaagtacattttagaaTGACAGGaaagttaaaaatgttattcagcacAAATGTGGATATTATTTATATAGTCCATTTATGttcaatatttaaacataaaattctGAAGGAATGTGTTTAGCCTTTTTGAATTATTACTGTCTTCAAATGTATGCTAATACAGTTtaagccagaaaaaaaaaaaaaacataagatcAAGTATAGCTGTACTAATATATCAGCAAACAACCATCACTAAGATTAGGAGAGCATCTTCAGCAGAGTGTGTAGAGATATTGACCACAGCAATCCTTGAGCTTCATGCATCAGCAGCACAGCGGAAGAACACTGTTTTGGCATTTCTGTAAAAAGAaggacaatttaaaaaaattatcatagTACTGCATTTATTTGTACAGCTTACTTGCACTCTCACATGTTCTTTCCTGAACTTGCCTTGTCGTTTAAATGCTCTGCCTGTATGCATTCAATGGTGGACTCAAGGAGGGCAACTGCTCCCTTACCCCCATggcattagtattattagtgcccttttaaaaagtggcaaaaaagagacaaaatgcCCTTCTGACTGCACTTCTTAAAGTAAAAAGGCATAAAGTGCCCACCAAGGGGAATACGAATAATATATGAATTAGTGTTGAAGTCAAGACTGCTAGAGCTAGagagatttaaataaaaacaaacaaaaaattgaTCTTCCATATTTATCAAAATTACTCTTAATCTGTGTCTCTTAATGAGAAGTCACCAAATGCATCAACTAAATCAAATTCTattaatttttataatatatgttttttaattaatatgtaaaaaaaaaaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU5273 True 1236 lncRNA 0.30 2 15763244 15772504

Neighbor

gene id symbol gene type direction distance location
LOC103028185 NA coding upstream 1183 15733287 ~ 15762061 (+)
LOC103029544 NA coding upstream 33933 15709480 ~ 15729311 (+)
LOC103023867 msi2b,msi2,LOC108425902,LOC107587484,LOC107682662,LOC108277875,LOC108435815,LOC105028669,LOC106603292 coding upstream 145457 15211657 ~ 15617787 (+)
akap1 akap1b,akap1 coding upstream 576849 15167460 ~ 15186395 (+)
LOC103021895 NA coding upstream 697027 15051474 ~ 15066217 (+)
LOC103027482 NA coding downstream 117701 15890205 ~ 15892830 (+)
LOC103026903 aldh3a2a,LOC108425811,LOC107586255,LOC107729125,LOC107662794,LOC108277491 coding downstream 162004 15934508 ~ 15940392 (+)
LOC103027191 LOC108425812,LOC108277490 coding downstream 173224 15945728 ~ 15952683 (+)
LOC103025893 tpst1,LOC108425813,LOC108277496,LOC107662793,LOC107657564 coding downstream 235161 16007665 ~ 16069129 (+)
timm50 timm50,LOC107586258,LOC107729126,LOC107728222,LOC107662791 coding downstream 387254 16159758 ~ 16192568 (+)
LOC111192856 NA non-coding upstream 98896 15660210 ~ 15664348 (+)
LOC111192011 NA non-coding upstream 107923 15639346 ~ 15655321 (+)
G3808 NA non-coding upstream 144073 15617118 ~ 15619171 (+)
G3855 NA non-coding upstream 226001 15536490 ~ 15537243 (+)
G3840 NA non-coding upstream 387601 15374631 ~ 15375643 (+)
G3917 NA non-coding downstream 113610 15886114 ~ 15888367 (+)
G4120 NA non-coding downstream 384008 16156512 ~ 16157533 (+)
G4158 supt5h,LOC107586261 non-coding downstream 521007 16293511 ~ 16310645 (+)
G4164 NA non-coding downstream 539437 16311941 ~ 16312669 (+)
G4167 NA non-coding downstream 541608 16314112 ~ 16314937 (+)
LOC103023550 nf1 other upstream 600288 15072840 ~ 15162956 (+)
G3790 NA other upstream 724330 15038555 ~ 15038914 (+)
G3736 NA other upstream 799661 14961173 ~ 14963583 (+)
LOC107197063 capns1,LOC108425806,LOC105901516,LOC107700232,LOC107548486 other upstream 917618 14840293 ~ 14845626 (+)
LOC103039352 nova2,LOC103039352,LOC108440380,LOC108277822,LOC107669728,LOC107589717,LOC107756760,LOC107379798 other upstream 1258229 14444558 ~ 14505015 (+)
LOC103040601 NA other downstream 9134 15781638 ~ 15826103 (+)
G4221 NA other downstream 770438 16542942 ~ 16545854 (+)
G4219 ckm,ckmb,ckma,LOC107690449,LOC107683830,LOC107601735,LOC107743697,LOC107718278 other downstream 846542 16619046 ~ 16623069 (+)
LOC103039709 NA other downstream 2237674 18010178 ~ 18012103 (+)
LOC103034503 efhd1,LOC103034503,LOC107669899,LOC107741634,LOC107585735,LOC107564379 other downstream 2268785 18041289 ~ 18422356 (+)

Expression


Co-expression Network