LOC111192355


Basic Information

Item Value
gene id LOC111192355
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 16356282 ~ 16366689 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU5658
ATTAGGGTGAAATTTGATACCATGTAGGCCCCGACCAAAATGTCTCAGTACTACAGAGTACCGAAAGGTCAATAAAATATCTGTGAGGAAAAAAAGGGGACGGTGTGCTGGTATAGCTTTAAATAAGAAACTTGAGGCAGTTTACATGGTTTTAATGCCCCCTAGTGGCTTAGTTAGTAACAGCATAGCCTCAATTCAAACTTGTTTAGTTGTTAACTGACCATCCAGCAGTGCAGTCAGTCATTGTTTTCTCCCGGTGAAATCTTGGCCCACATATGCCTTGTTGAGTCATCTTCTCACAGTGGACGGATGGACAGAAATTTGTTTTATAtgaacCTGGAGCACATGATTTACATCTTCTAAATGACAGTGAGCAAAGGGGAAAGCAGAGGAGCTCTCCTTTCAGcctctgaatgaatgaaaaacagCAGGCTTGGATTATCTTGGCCGCCATCAGCGGCGGGACAGAAGAGCAAGAGAGGGAGTTGAGGCTGAGGCCAagaccttgtatctccaaattGGTACCATTACAGAAGAAGGAAAATAAGGTTTGGACGTAGAACCGTGACTGAAGTTCCTCCTCCTTCCAGTCTAACATTTGATAAATGTCCATATCATACCTAACTTTCTGTTTCCCATGATAAATATTTTCACGCTCCATCTTCTCTTTTGCTCACAGCAGTAGCCAACTCAAAGTTCTTCCCATTTCTCCAATCACTCCCTTCTTATACTACAACCATTTGTTGAAGGCATGCTCAATATTCTACAATGGATTACAAATAAAGGATTTCAATTAGTTTCACTGTGAAATCTAATAAgctgattttactttaaaaaagaatgcaaacagattgcctaaaacatttttagttgaCATTAGT
>XR_002649856.1
TAATGAGTGCTTGCTGTTTGATCAGGCACCTTTGTGCTGTCAGCAAGAGTGTAGAAAGTATTTAACACTTACaacaccaaaccaaacaaagttGGGACACTGtctaaaatataagtaaatgtaAGTAAGAACACAACACAGTCATTTGCAATCTATTATAGGGTCATCTCAGTTTTCTCAGAAAACCTGATAGCAGCAACACATCTCCAAATAAATTGTACTACTATAGTGTTACTACTAAAATCAGCTGGAGGAGAAATTTGCAATTAACCCACATGACTGGgtataaaaagagcattttagagAGGCAGAGGCGCATAAGAAACAAGGCAGATGGTCAACATTGGATactggtgatctttgggccctcaggcCGCATTAAAAACAGGCATGATTAGGGTGAAATTTGATACCATGTAGGCCCCGACCAAAATGTCTCAGTACTACAGAGTACCGAAAGGTCAATAAAATATCTGTGAGGAAAAAAAGGGGACGGTGTGCTGGTATAGCTTTAAATAAGAAACTTGAGGCAGTTTACATGGTTTTAATGCCCCCTAGTGGCTTAGTTAGTAACAGCATAGCCTCAATTCAAACTTGTTTAGTTGTTAACTGACCATCCAGCAGTGCAGTCAGTCATTGTTTTCTCCCGGTGAAATCTTGGCCCACATATGCCTTGTTGAGTCATCTTCTCACAGTGGACGGATGGACAGAAATTTGTTTTATAtgaacCTGGAGCACATGATTTACATCTTCTAAATGACAGTGAGCAAAGGGGAAAGCAGAGGAGCTCTCCTTTCAGcctctgaatgaatgaaaaacagCAGGCTTGGATTATCTTGGCCGCCATCAGCGGCGGGACAGAAGAGCAAGAGAGGGAGTTGAGGCTGAGGCCAagaccttgtatctccaaattGGTACCATTACAGAAGAAGGAAAATAAGGTTTGGACGTAGAACCGTGACTGAAGTTCCTCCTCCTTCCAGTCTAACATTTGATAAATGTCCATATCATACCTAACTTTCTGTTTCCCATGATAAATATTTTCACGCTCCATCTTCTCTTTTGCTCACAGCAGTAGCCAACTCAAAGTTCTTCCCATTTCTCCAATCACTCCCTTCTTATACTACAACCATTTGTTGAAGGCATGCTCAATATTCTACAATGGATTACAAATAAAGGATTTCAATTAGTTTCACTGTGAAATCTAATAAgctgattttactttaaaaaagaatgcaaacagattgcctaaaacatttttagttgaCATTAGTTGAATGAatcaaactaaaaattaaatatagttGCTTGTATTTAATACTTTGAATAAGGACCAGCtaatttaatagatttttaataaCTGAAACATTAACAGACACCCCCTTTTTTAACAGCATAATTCAGCATAAAACAGCATTAGTGCATGATTGGGCACTGTGGCCTTTAGCCAACATAAAGTCACTTATGGCAGCACAGAAAGTGTTAACTTGCTCtaatagcctacaacactgagaccaggcAGGCAAACATTACATAAGAAAAAACATGGGTATAAAGCACAGGAGATCGATTTTGTTACTGTATTAAGTAATCCCTTGAGTTTTCTTCACTGAAAGTTTCTTTATAGTGTTTTGAACTGAGGGTGCTCACTCATCTCTCGAGGGCCTTGACAAGAGCATGTGATGATTTATCTGACCACAGAAAAGTCCATCCAGTTCATTAGCAACCTTTAAACCGTCATCACCAAGAGACCCTCAAGCCACTAGACTGGTCAGTCTCGGGGGAAATCTTCCCGACATCCCGAAGAAAACAGCATGGCTCTCTGTAAACACTCTGGCTGCGCCTTCATGTGGCGAAGGGGTAAAAGTTCGGAGAGAAACCGCAGCACACCAGCGCTTCAGAATCCCCCTCCTCCCCTGGAGACGGAGTTCATTTTGTGGCTGCCCTTTGTGGTGAGGGGGCTTCACTTCGGGTTTCACCAAAAGTGGAGGGGAATTCATGAACActctgtgctgcaaaacacactAAGGATCTGGCCTGGGTGAGGTTCCATTCGAGGTCTGTGAATTCTAAGGCTCAGCACGAATTAAGAGGTATGACAGCTTGTTACCATATATGCAGCTTGGCAGTGTGGAATTATGCCCCAACAAAGATGTTGCCATTAACTAAACGGCAAACGGAGAACAGTGAGGTACAGTATCGTGATCACAACCCTTGCATTTACTTTCATGTCTGCTTTTTGGTAGCCAAGTTGGATTCAATTAGGTCTTGGCACTTCATATGAGGTTTTGGCACTAAAAGTCCAAAACCCAGGAAACTCTCGGGCCATCTCAGCCAAAGTCTTGAGTTATGCTTGTTATATCTGTGCTATTACTTTCCCAGGCTCTCAATCACAAAACACTTACACTGGCTCTTAGAACAGTTAGGCGATACATATTTGAGgtcaaattaaaaattaataaatggaaCCACTAGGGCAAGTGCCGATCGAGGGTTTTATCAGGTCATAACTGTATAATACCGGCTTCAGCATAATGAATTCCAGTCACTGAAGCTCTATATTcttcttagaaaaaaaatgctggccTAGATTCTTTATGTGGCGGAGATGGGAAATGACCCGTTGAATTTAACACCACCGACACTGAAAGGAAGTGTCCTGACGGTGACTCCTCCCTAGTGCTGCATACTGCCCAAACTATGATCAAGATCAGGAAAGGGAGTCACCTGCAAGCTGCCTTAAATACAGAACCTCCCCTACTTGCATTCATTCCTTCCATCTCCACTTCAACCTCTCCCTGTATTGTTTCACTTGAAGACTCACTTGCTCCCTTGTTCTCTCCCCCTCCATGCCCTACTGTCATTTTGATGTTTTCACCCACTCCCACCATTCATCTTCTAATGTGGTTAGCATGATACGtctaaaacaataaagaatgCAGGTTA

Function

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU5658 False 881 lncRNA 0.51 4 16356675 16365017
XR_002649856.1 True 2946 lncRNA 0.42 4 16356282 16366689

Neighbor

gene id symbol gene type direction distance location
LOC103022964 LOC103022964 coding upstream 64162 16280969 ~ 16292120 (+)
LOC103022345 chp2,LOC108425820,LOC108277499,LOC107657559,LOC107586310,LOC106580765 coding upstream 79449 16271162 ~ 16276833 (+)
dll3 NA coding upstream 144777 16205897 ~ 16211505 (+)
timm50 timm50,LOC107586258,LOC107729126,LOC107728222,LOC107662791 coding upstream 163714 16159758 ~ 16192568 (+)
LOC103025893 tpst1,LOC108425813,LOC108277496,LOC107662793,LOC107657564 coding upstream 287153 16007665 ~ 16069129 (+)
LOC103047564 ppp1r14a,ppp1r14ab,LOC103047564,LOC108425826,LOC107729097,LOC107586311,LOC107597604,LOC107662758 coding downstream 87995 16454684 ~ 16477105 (+)
exoc3l2 exoc3l2,exoc3l2b,LOC107729130,LOC107597542 coding downstream 115507 16482196 ~ 16530242 (+)
LOC103030966 NA coding downstream 164660 16531349 ~ 16536523 (+)
LOC107197545 NA coding downstream 171782 16538471 ~ 16542443 (+)
mark4 mark4,si:dkey-31m14.7,LOC107585548 coding downstream 194797 16561486 ~ 16617930 (+)
LOC111192356 NA non-coding upstream 5731 16349607 ~ 16350551 (+)
G4167 NA non-coding upstream 41345 16314112 ~ 16314937 (+)
G4164 NA non-coding upstream 43613 16311941 ~ 16312669 (+)
G4158 supt5h,LOC107586261 non-coding upstream 45637 16293511 ~ 16310645 (+)
G4120 NA non-coding upstream 198749 16156512 ~ 16157533 (+)
G4214 NA non-coding downstream 113646 16480335 ~ 16480652 (+)
G4277 NA non-coding downstream 312716 16679405 ~ 16681219 (+)
G4331 NA non-coding downstream 778232 17144921 ~ 17145205 (+)
G4334 NA non-coding downstream 788071 17154760 ~ 17155096 (+)
G4337 NA non-coding downstream 790955 17157644 ~ 17157851 (+)
LOC103040601 NA other upstream 530179 15781638 ~ 15826103 (+)
LOC103023550 nf1 other upstream 1193326 15072840 ~ 15162956 (+)
G3790 NA other upstream 1317368 15038555 ~ 15038914 (+)
G3736 NA other upstream 1392699 14961173 ~ 14963583 (+)
LOC107197063 capns1,LOC108425806,LOC105901516,LOC107700232,LOC107548486 other upstream 1510656 14840293 ~ 14845626 (+)
G4221 NA other downstream 176253 16542942 ~ 16545854 (+)
G4219 ckm,ckmb,ckma,LOC107690449,LOC107683830,LOC107601735,LOC107743697,LOC107718278 other downstream 252357 16619046 ~ 16623069 (+)
LOC103039709 NA other downstream 1643489 18010178 ~ 18012103 (+)
LOC103034503 efhd1,LOC103034503,LOC107669899,LOC107741634,LOC107585735,LOC107564379 other downstream 1674600 18041289 ~ 18422356 (+)
G4550 sik3 other downstream 1705275 18071964 ~ 18073663 (+)

Expression


Co-expression Network