G4214


Basic Information

Item Value
gene id G4214
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 16480335 ~ 16480652 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU5707
TACCCTTTCCCACGCCTTCATTGCTTGGTCTCttgtgtatattgtatgtgCCTATGtgctgaggttttttttttgatgttccTACACTGTGCTCTTCAGGGCACAGTCTaggggtatgtttttttttaccctcttCTTCCCCCTTGTATCCCTCTAACTGAAGAAATGATTGGCGGCGCGTGCACACGCTGCGGCTTACCCTGTCTTCCTATCCTGTCCTGTTTCCCCCTTGTATGTTATTGTATGGATGGGTTGATGGCTAATTTCGCTGGTTGACCATGTGACAATAAAGgcaattctattctattctattctatt

Function

GO: NA

KEGG:

id description
ko04360 Axon guidance

RNA

RNA id representative length rna type GC content exon number start site end site
TU5707 True 318 lncRNA 0.37 1 16480335 16480652

Neighbor

gene id symbol gene type direction distance location
LOC103047564 ppp1r14a,ppp1r14ab,LOC103047564,LOC108425826,LOC107729097,LOC107586311,LOC107597604,LOC107662758 coding upstream 3230 16454684 ~ 16477105 (+)
LOC103022964 LOC103022964 coding upstream 188215 16280969 ~ 16292120 (+)
LOC103022345 chp2,LOC108425820,LOC108277499,LOC107657559,LOC107586310,LOC106580765 coding upstream 203502 16271162 ~ 16276833 (+)
dll3 NA coding upstream 268830 16205897 ~ 16211505 (+)
timm50 timm50,LOC107586258,LOC107729126,LOC107728222,LOC107662791 coding upstream 287767 16159758 ~ 16192568 (+)
exoc3l2 exoc3l2,exoc3l2b,LOC107729130,LOC107597542 coding downstream 1544 16482196 ~ 16530242 (+)
LOC103030966 NA coding downstream 50697 16531349 ~ 16536523 (+)
LOC107197545 NA coding downstream 57819 16538471 ~ 16542443 (+)
mark4 mark4,si:dkey-31m14.7,LOC107585548 coding downstream 80834 16561486 ~ 16617930 (+)
LOC103044410 klc3,LOC108425834,LOC107601696,LOC107743695 coding downstream 152671 16633323 ~ 16643820 (+)
LOC111192355 NA non-coding upstream 113646 16356282 ~ 16366689 (+)
LOC111192356 NA non-coding upstream 129784 16349607 ~ 16350551 (+)
G4167 NA non-coding upstream 165398 16314112 ~ 16314937 (+)
G4164 NA non-coding upstream 167666 16311941 ~ 16312669 (+)
G4158 supt5h,LOC107586261 non-coding upstream 169690 16293511 ~ 16310645 (+)
G4277 NA non-coding downstream 198753 16679405 ~ 16681219 (+)
G4331 NA non-coding downstream 664269 17144921 ~ 17145205 (+)
G4334 NA non-coding downstream 674108 17154760 ~ 17155096 (+)
G4337 NA non-coding downstream 676992 17157644 ~ 17157851 (+)
G4346 NA non-coding downstream 708380 17189032 ~ 17189246 (+)
LOC103040601 NA other upstream 654232 15781638 ~ 15826103 (+)
LOC103023550 nf1 other upstream 1317379 15072840 ~ 15162956 (+)
G3790 NA other upstream 1441421 15038555 ~ 15038914 (+)
G3736 NA other upstream 1516752 14961173 ~ 14963583 (+)
LOC107197063 capns1,LOC108425806,LOC105901516,LOC107700232,LOC107548486 other upstream 1634709 14840293 ~ 14845626 (+)
G4221 NA other downstream 62290 16542942 ~ 16545854 (+)
G4219 ckm,ckmb,ckma,LOC107690449,LOC107683830,LOC107601735,LOC107743697,LOC107718278 other downstream 138394 16619046 ~ 16623069 (+)
LOC103039709 NA other downstream 1529526 18010178 ~ 18012103 (+)
LOC103034503 efhd1,LOC103034503,LOC107669899,LOC107741634,LOC107585735,LOC107564379 other downstream 1560637 18041289 ~ 18422356 (+)
G4550 sik3 other downstream 1591312 18071964 ~ 18073663 (+)

Expression


Co-expression Network