G4277


Basic Information

Item Value
gene id G4277
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 16679405 ~ 16681219 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU5801
ACAATTGTCTGCCCGAGCACAGTAGCCAGTGATGTAGAACTTGCAGAGCTCTTTCTTCTTAGGCAATTCTATGTCATGGCTGAAGTTGCAGTGCTCCCCCCAGGTGCAACGACCCTCAATGTAGTACTTGCAGATGGCCTTGCCCTTCTTGTCGTGATAATCATGCTTCCTCTGGCCACCTCCTCCATCCCCCATGTCCATatctccatcatcatcatcatagcCTTGATCTCCTCCACGACCCCTTCCTCGATTTCTACCTCTGCCTCGGTTCATGCCTCGCATTCCTTTACCCCGTCCTCGACCTCTTCCACCACGAATACCTCGTCCTCTGTCCTTAGACTTCCTGTACTGGTTCAGTTCTTTTGAgtaatcatcataatcatcatcccCCATGTTATCGTAGTCATCATCACCATACTCCATGTCATCTCCGTACATGCCATCCCCATCATCATCTCCCATCTTGCCCCGTCCACGTCCTCGGCTTCCTCCTCTTCCGCGACCCCTCATACCCCCTCTGCCACGGCCTCTTAAGTTCTTAATTCGGCCTCTACCACCTCTGCCACGCATTCCACCTCTACCCTCTTTTTCCTTTCGGTATTGATTAAGTTCCTTGGTGAAATCATCGTAGTCATCATCACCCATGTCTTCCTCCTCCTCACCCTCATAGTTCTCCTCATCATAATCGTCATAGCCACCATAGCCTTGTTTGTCCCGGCTTGTCATGTAGCCGCCTTTCTTTCCCATGGGTGCACCATGACccgaaggaggaggaggagg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU5801 True 783 lncRNA 0.51 6 16679405 16681219

Neighbor

gene id symbol gene type direction distance location
LOC103044410 klc3,LOC108425834,LOC107601696,LOC107743695 coding upstream 35585 16633323 ~ 16643820 (+)
mark4 mark4,si:dkey-31m14.7,LOC107585548 coding upstream 61475 16561486 ~ 16617930 (+)
LOC107197545 NA coding upstream 136962 16538471 ~ 16542443 (+)
LOC103030966 NA coding upstream 142882 16531349 ~ 16536523 (+)
exoc3l2 exoc3l2,exoc3l2b,LOC107729130,LOC107597542 coding upstream 149163 16482196 ~ 16530242 (+)
LOC111192859 sae1,LOC107718284 coding downstream 8015 16689234 ~ 16691759 (+)
lsamp lsamp coding downstream 773131 17454350 ~ 17873816 (+)
LOC111192370 NA coding downstream 1336540 18017759 ~ 18022389 (+)
LOC103030597 LOC108412477 coding downstream 1443475 18124694 ~ 18131953 (+)
sidt2 sidt2 coding downstream 1456805 18138024 ~ 18166677 (+)
G4214 NA non-coding upstream 198753 16480335 ~ 16480652 (+)
LOC111192355 NA non-coding upstream 312716 16356282 ~ 16366689 (+)
LOC111192356 NA non-coding upstream 328854 16349607 ~ 16350551 (+)
G4167 NA non-coding upstream 364468 16314112 ~ 16314937 (+)
G4164 NA non-coding upstream 366736 16311941 ~ 16312669 (+)
G4331 NA non-coding downstream 463702 17144921 ~ 17145205 (+)
G4334 NA non-coding downstream 473541 17154760 ~ 17155096 (+)
G4337 NA non-coding downstream 476425 17157644 ~ 17157851 (+)
G4346 NA non-coding downstream 507813 17189032 ~ 17189246 (+)
G4401 NA non-coding downstream 666443 17347662 ~ 17348010 (+)
G4219 ckm,ckmb,ckma,LOC107690449,LOC107683830,LOC107601735,LOC107743697,LOC107718278 other upstream 56336 16619046 ~ 16623069 (+)
G4221 NA other upstream 133551 16542942 ~ 16545854 (+)
LOC103040601 NA other upstream 853302 15781638 ~ 15826103 (+)
LOC103023550 nf1 other upstream 1516449 15072840 ~ 15162956 (+)
G3790 NA other upstream 1640491 15038555 ~ 15038914 (+)
LOC103039709 NA other downstream 1328959 18010178 ~ 18012103 (+)
LOC103034503 efhd1,LOC103034503,LOC107669899,LOC107741634,LOC107585735,LOC107564379 other downstream 1360070 18041289 ~ 18422356 (+)
G4550 sik3 other downstream 1390745 18071964 ~ 18073663 (+)
G4612 NA other downstream 2078156 18759375 ~ 18759858 (+)
G4775 LOC108411134 other downstream 2479512 19160731 ~ 19165631 (+)

Expression


Co-expression Network