G4460


Basic Information

Item Value
gene id G4460
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 17929724 ~ 18009347 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU6007
gagagagagagagagagagagggagagaggtaCTCAGGAGGACAAACAGAGGAACACAAAATCTCTGCAATCCAAACTCCACCGAATGGTCCGGACGCTCAACGTTTGTGAAGAACGCTGAACTTTACAGAGAAGAATTTATTTcgtaagaaaataaaagataaaatcaagaagaagaagaagaagaagagaaaaagaaaagatgaaTGGATGCGAGCTGACCTGTCTCTTTGTGCTCATCGCATTTCCTCTGGCCGTCGCAAACCCGGAGAATATAGAGATTCATGGGACTAAAGTTAACTGAAGTGTCCAGAAAATGGGACATGGTATAAAGGCAACAAAGTATTGGGTAATGAATCGACTTAtaccataaataaatacacggAAGACCACAACGATCTGTATGAATGCAAAGGAAGCAATCAATCCTACTACTTCTACACCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU6007 True 446 lncRNA 0.44 3 17929724 18009347

Neighbor

gene id symbol gene type direction distance location
lsamp lsamp coding upstream 55908 17454350 ~ 17873816 (+)
LOC111192859 sae1,LOC107718284 coding upstream 1237965 16689234 ~ 16691759 (+)
LOC103044410 klc3,LOC108425834,LOC107601696,LOC107743695 coding upstream 1285904 16633323 ~ 16643820 (+)
mark4 mark4,si:dkey-31m14.7,LOC107585548 coding upstream 1311794 16561486 ~ 16617930 (+)
LOC107197545 NA coding upstream 1387281 16538471 ~ 16542443 (+)
LOC111192370 NA coding downstream 8412 18017759 ~ 18022389 (+)
LOC103030597 LOC108412477 coding downstream 115347 18124694 ~ 18131953 (+)
sidt2 sidt2 coding downstream 128677 18138024 ~ 18166677 (+)
LOC103032687 gmfg,LOC103032687,LOC108277844,LOC107757325,LOC107679065,LOC107090391 coding downstream 241576 18250923 ~ 18256343 (+)
LOC103033229 psa6,LOC103033229,LOC106612618,LOC105026880,LOC106580837 coding downstream 265478 18274825 ~ 18281029 (+)
G4456 NA non-coding upstream 8719 17882588 ~ 17921005 (+)
G4451 NA non-coding upstream 78281 17847764 ~ 17851443 (+)
G4420 NA non-coding upstream 415924 17449394 ~ 17513800 (+)
G4406 NA non-coding upstream 562473 17366847 ~ 17367251 (+)
G4401 NA non-coding upstream 581714 17347662 ~ 17348010 (+)
G4531 NA non-coding downstream 25164 18034511 ~ 18038744 (+)
G4549 NA non-coding downstream 54087 18063434 ~ 18065761 (+)
G4563 NA non-coding downstream 168261 18177608 ~ 18178083 (+)
G4542 NA non-coding downstream 202809 18212156 ~ 18280613 (+)
G4582 paf1 non-coding downstream 249224 18258571 ~ 18306252 (+)
G4219 ckm,ckmb,ckma,LOC107690449,LOC107683830,LOC107601735,LOC107743697,LOC107718278 other upstream 1306655 16619046 ~ 16623069 (+)
G4221 NA other upstream 1383870 16542942 ~ 16545854 (+)
LOC103040601 NA other upstream 2103621 15781638 ~ 15826103 (+)
LOC103023550 nf1 other upstream 2766768 15072840 ~ 15162956 (+)
G3790 NA other upstream 2890810 15038555 ~ 15038914 (+)
LOC103039709 NA other downstream 831 18010178 ~ 18012103 (+)
LOC103034503 efhd1,LOC103034503,LOC107669899,LOC107741634,LOC107585735,LOC107564379 other downstream 31942 18041289 ~ 18422356 (+)
G4550 sik3 other downstream 62617 18071964 ~ 18073663 (+)
G4612 NA other downstream 750028 18759375 ~ 18759858 (+)
G4775 LOC108411134 other downstream 1151384 19160731 ~ 19165631 (+)

Expression


Co-expression Network