G4549


Basic Information

Item Value
gene id G4549
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 18063434 ~ 18065761 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU6118
CGTTTCCCACTGCAGCCTCGTTTCTAATCTCTTCTCACAAGCACTGTAGTAGTGTGACCCGGATAAGCTCCGCCTCCAAATATGAACCTCCATAGCAATTGTTGCTAGGTTGGACAAGCTTtgctggcaaaaaaaaatccaccattTATCCCCTTGTGCCGTAACCATAATCTTACCTGTATTTAGATCAATATTTGTGCTTTAGTCCACTATAAgccatatttattaattaatttaatttgaatttgCCTCATTGGTGGCTGATACAGAGCATGCATATATTTTTGGTTATTTATTAAGATTCTTAAAGCACCAATCGTAGTAAGAGCCAGGCAGacaaacatggtaaacatgttaaacatggtgaagGTAGTTACATAAACACACTGTAGGGTTTAAGCATAGTCCTATAGACCATTCTTTCTtttcaatataaaataagtgCTGTGCCGTAATTTCTTAACATGCTTTATGACTATTTGGAGCGCTTGTCTGCTTTTTAGCAGCAGCACACTGAATTAATAACCAGTTCCAGTTCCATTGTAGCATAAGCTACTTTGGCTAAATCGATCATATACAACCTAAAACATGAAAGGGTCGAGCACAAtgtttaacaaataaatatgcACTTGttgacatacagtaccagtcaaacatatagacacatttttattagaggtgtgtccagaggtttgactggtattgtataaatattcatattttgaaATGTTATGTTTAAAATTACTTGGCAAAGAAATGTTAGCTTGATCTTTGcttaaattatacattaaattataatacaaatataaaagaaatagGGATTTCAAAATTATTCTAGATGTTTGTGTTAGCAtacattctgtttttatattttgttgcttaaataacttaaattagCTACACTGTTACAGTAGCctagcatttttttaataagagaCTTAGTTAACAAAGAAATGgtaacattttgttttgtttggttcCATATTCCAATTTGTAGGGATATTTCTGCAAAGCTAGTTCAGCTTAGCAACATTTTCTAAGGAACATTTGCATTTAAAGCATGAAAAGGCTAAGCTAATGGCTTTGGGCTAAAGCTCATGCTAAATACACATCACCTCCCACCCTTATAACAACCAATATAATAATCGAACAGTAGCTTGAACAAATAGGCTAACATGGCTAACTGTGAACACATGAGAGTCACATGTGAACATGGCTAACTGTGAACACATAAGAGGTCAATTAGCTCACTTAGCAACTGGAGCTAATATTTCTCAATCTCAGTAACTTGCTGAAAAGGTCTGCGTTTGAGGGTTATTAtgaataaatgtgaaaataagATGCTAAGTGCTGCTAGTTAGAACTCAGCTAGCAGTTCTGTAATGTTGCACAGCGTCTATCTGCCTTCATTCACGTTTAGCAACAGGTTTTTTAGTATATCGCTAATCTTGAGAGAAGCCTTAACTTGTGCTGCGCTCCATTTTCAAATTAAACAGCTATCGTTTGTTAGCATTACCTCAGGTTAGCTTTGCTACTGATACCATATCAGTTGCTAACAAACCATTAGGTAATATTTTGTGAATTCCAACAGcataataacatattataacacattataatacatgtCCACAGATAGAATTTGGACACTGCtgtgtgtattgttttgtatatttattaaggctacgttcatacagcaggtaaatgtggttcaaattctttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU6118 True 1722 lncRNA 0.44 2 18063434 18065761

Neighbor

gene id symbol gene type direction distance location
LOC111192370 NA coding upstream 41045 18017759 ~ 18022389 (+)
lsamp lsamp coding upstream 189618 17454350 ~ 17873816 (+)
LOC111192859 sae1,LOC107718284 coding upstream 1371675 16689234 ~ 16691759 (+)
LOC103044410 klc3,LOC108425834,LOC107601696,LOC107743695 coding upstream 1419614 16633323 ~ 16643820 (+)
mark4 mark4,si:dkey-31m14.7,LOC107585548 coding upstream 1445504 16561486 ~ 16617930 (+)
LOC103030597 LOC108412477 coding downstream 58933 18124694 ~ 18131953 (+)
sidt2 sidt2 coding downstream 72263 18138024 ~ 18166677 (+)
LOC103032687 gmfg,LOC103032687,LOC108277844,LOC107757325,LOC107679065,LOC107090391 coding downstream 185162 18250923 ~ 18256343 (+)
LOC103033229 psa6,LOC103033229,LOC106612618,LOC105026880,LOC106580837 coding downstream 209064 18274825 ~ 18281029 (+)
LOC103036794 map4k1,LOC108443018,LOC107757316,LOC107679433,LOC101883459,LOC104956018 coding downstream 266578 18332339 ~ 18386319 (+)
G4531 NA non-coding upstream 24690 18034511 ~ 18038744 (+)
G4460 NA non-coding upstream 54087 17929724 ~ 18009347 (+)
G4467 NA non-coding upstream 78245 17958512 ~ 17985189 (+)
LOC111192366 NA non-coding upstream 120272 17890228 ~ 17943162 (+)
G4456 NA non-coding upstream 142429 17882588 ~ 17921005 (+)
G4563 NA non-coding downstream 111847 18177608 ~ 18178083 (+)
G4542 NA non-coding downstream 146395 18212156 ~ 18280613 (+)
G4582 paf1 non-coding downstream 192810 18258571 ~ 18306252 (+)
G4589 crx,LOC108443020,LOC107395012,LOC106935423,LOC106914190,LOC103155943,LOC107094494 non-coding downstream 232755 18298516 ~ 18302148 (+)
G4587 NA non-coding downstream 239597 18305358 ~ 18306149 (+)
LOC103039709 NA other upstream 51331 18010178 ~ 18012103 (+)
G4219 ckm,ckmb,ckma,LOC107690449,LOC107683830,LOC107601735,LOC107743697,LOC107718278 other upstream 1440365 16619046 ~ 16623069 (+)
G4221 NA other upstream 1517580 16542942 ~ 16545854 (+)
LOC103040601 NA other upstream 2237331 15781638 ~ 15826103 (+)
LOC103023550 nf1 other upstream 2900478 15072840 ~ 15162956 (+)
G4550 sik3 other downstream 6203 18071964 ~ 18073663 (+)
G4612 NA other downstream 693614 18759375 ~ 18759858 (+)
G4775 LOC108411134 other downstream 1094970 19160731 ~ 19165631 (+)
LOC107197594 NA other downstream 2483430 20549191 ~ 20551635 (+)
LOC103037169 NA other downstream 2492762 20558523 ~ 20582874 (+)

Expression


Co-expression Network