G4600


Basic Information

Item Value
gene id G4600
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 18839966 ~ 18875470 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU6184
ttatttatcatttattttcaacagtaccacagcaaccacatggaCAATACCTGGTACACCTGGTACACCACGGCAACCTCTTATTGTAGCACATAGTAACAGCTTAGCAACTGCTAAGGAGCACCCTAGCAACCAAACTGCGACCATAGCAATTGCATTGGAACATCTTAAAAACCTCCTGGCAAACCAGTGGGAGAAGTTCTGTGCTGAGCATAAATgataaactctctctctttatatgtctctttttctctgtctttctttctttctttctctctctctctttccctctctttccctctatcttacaccctgcacatggtgtgttgcaatgctcattgctatcttacacctcgccaACAGTCTTTTTCATGCCTtccacctgcattgtttaaaattgctgttcacttcacagtgtgaaagagtaggtcagtttcctctgctgagaggcGTTGGACACGTCTAGGttgctgcgccattaaaatagcaattcaccaaagtcagagcgcacctggctcttaaagggaattacCAGAGACatgttgattggtttatttcatgttacgcccaaaacacacccttgattaattaagagaattagtatatgTGCATTTCAAGATGCAAAagaggtgtacttttcccgtcgttatgatagcaaagacacactgacacaccctaaatcaagctgcacggtgcactgTTAATTtcctctgtcactctctctctctctctctctctctctctctctctatctgctgCCCCACAAATAGTACTATTTTTCAAACTGtctaaggtgtgtgtgtgtgtgtgtgtttgggcagTGAGCATATTACAGTGTTGTCTCCATTCATATATCTCTCCTTTCATTTTATCATTGATTTCAGAAACAAGCGTAGGTGTGTATCAGAAAGCCATATCAGTGGCGGGGTCTGGAGGGTGACCTCACATcaacacacgcatacacacacacacacacacacacacactcataaagCAATGATTAAACAGTCTTCTACTGGGAAACCTCCTTCTGTAGCACGCTGTTGGAACAGATGCACTGTAATTTATGGGTCGAGTGGCATTGacagagactgaaagagagagagagagagatgatgatgatgatgatgatgatgatgaaggtatAAAATGTTATAGAGTATGTTAATTTATCAGGATTAAATGCTGCCTTTAAGTTACATCAGAAATATTGTATTTACAAACTGGGATTTTAGGCTATGCCTGATATTATAAACAACATTATTGACATTTTAAGATCATTTAATGCCATAATGACATTATTATAAAGGCCACATATTTGTAATGAATCATAGTTTGGGAGATGTATACACACTGTTTGCACTGATTGGTCATTTAGCATgattggctaaaatactgttcacacAGTAGATTATATGGCCTTTATCAAATATTTTTGAGGTGATGTTGTCATGGGAGCGAGACACAGGACAGACAAGCACGGATACATCACAAATAATATATTAGATAAAGGATAAGGCAAATAAGAATGGTCAGGGGCAGGCAGGGGTCAGTAACAAATCTAGGTAAAAATGCCAaggcaaaatgcaaaaataggtCAATACCGAAAAAGCTAACAAACAAAAGGGCTAAGAAAAAGAGTAGCCTAAAGACCAAAAAAGGGTTGGAAACAAATGGTCAAAAACACAAAGGAAACGTGAGGTAGAAGAGCTATGTAAAATAGTTTCAATACCAGGCAAGGAGTAGGTGAAAGCAGGGGCTATTTATACAAGAgagtccaggtgtgagcaatcaatAGCACGGCGAGCCGGAACACCGATGCCTCACATCATCGGGCATGTCCGGAGGGTTGAGCACAGGTGCATCGGGGGGGAATAGAGTCTCTTTCTGGAGAATTAGAGTCAgtggcagacagacagtgacaggactgaCCCATGTCCAATTTTTGTACAATAAGTCCAAATTggtttttaaataatcaaaaaaaataaataaattggaaaTAAAGTTGCAGAATTAAATAACCAAAACAGAAATCTCAAAAAGAGTTCCAAAGTCGTACATACAAACGTCTGAGGTGGATTTAAAGGCAGCATAATTCTGAGTCATTTTGGAGCGTTTCTATTGCATCGATCATGTGGTGTAAAGAGTAGCTggaatttttttaataagttctggaaaaaaagtttCGTACAGAAATAGCAAAAAGAAAGTCTGAGAAAGAAAAACGCCatgtaataaaactaaaaactgaagGAGAGAAGAGTggaagagtgaaagaaaagTGCATCTGTCTGAAAGCTGTCCAGTCCAATTCTCGGGGAACTTAACAGTAGtaattaaaagtttggacacacccacAATTTTTCATTTCTGCTGTTTTCCACATTTTAAAACGAACAGTTTCTAAGTAAGTAAGCCATTAATACAATTATAGTAACATATAATCATctattcaaaaatgttaatcTTCTGCCAAATACGGCTGTTTAGTCGCCACCTCCTTGCAACACTCCTGATTGGCTGatgcatattaatattttaacaaagcTTATGTAGGAATCCATAGGGTGATATAACCTTTTCAGAATGTATGTTTCCTCTTAATCCCTGACTGAAGACTATACTAagaattataccacagttagttccgatcatgctatgtgattggctgagaggtgttctataagtgttattatcagccggtaatgcactgtaaccgaagctcaccatgtattactccaccacatacaggtaacctagcaacgatgcagcgcttacaaaccaaaccgcgcagctacaaacagagcagcaatggaactatttcaACGAAATAGAttatattttctcctcctctttaactcaaaatctttcaattaaCTGTGATAATGGatctgtggtataatcacaataatacactccagGTTCGTGCCATAactgtaatattggcactgctgtgctgtagtCGTATATCaccacagcagtgccaatattacacgttatagcaggaacctcgagtgtattattgcttatttgttttgtgggtatttaaataaaaactataataatgtttacattcaaattatttgtttgtttttttagcaaataaattcataaatagATATAAATTTTGTCAACAAATGTTCCTAAGGTATTAATAAGAAGATAATAGATAGAATTACAGTGTGCAATGaccaaaaatatttgaaaacatttttaaatcctTTTAAATGTTTGGAAATGTGTTTCAAATTTTCAactataaaaacagcattaatagTTACACTTGAAATAATTGTGAATTATTTGGAACTACAGTATTGAAGCTTTTAACGTGGGGAGGTACGCTAATCTAATTTTCCCATGATAACTTCTGTAAAAATGACCTAATTTGGAggaattaagagaattaaactTATGTTTCCTACACAAGTTTGCTAGacctcttaaaataaatcactgtttatcgaaagattttgagttaaagataAGGAGAAAATCTGTttggttaaaatagttccattgctgctctgtttgtagctgcgctgtttggcttgtaagcgctgcatcgttgctaggttacctgtatgtggtggagtaatacatgaagagcttgggttacagtgcattaccggc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU6184 True 3636 lncRNA 0.52 2 18839966 18875470

Neighbor

gene id symbol gene type direction distance location
LOC103035466 NA coding upstream 340835 18487006 ~ 18499131 (+)
trnag-ucc NA coding upstream 436190 18403705 ~ 18403776 (+)
trnaw-cca NA coding upstream 438841 18401054 ~ 18401125 (+)
LOC103034176 LOC108443019,LOC107663551,LOC107572208,LOC107557657,LOC107679443,LOC108277854 coding upstream 439828 18389428 ~ 18400138 (+)
LOC103036794 map4k1,LOC108443018,LOC107757316,LOC107679433,LOC101883459,LOC104956018 coding upstream 453647 18332339 ~ 18386319 (+)
LOC103038796 mtnr1ba,LOC108413652,LOC107745177,LOC107585812,LOC107705472,LOC107669925 coding downstream 30176 18905646 ~ 18929820 (+)
LOC103030891 LOC108278224,LOC107558831,LOC107705626 coding downstream 192993 19068463 ~ 19101318 (+)
LOC111192961 NA coding downstream 965749 19841219 ~ 19841977 (+)
psmd2 psmd2 coding downstream 1645744 20521214 ~ 20536207 (+)
LOC107197593 NA coding downstream 1662250 20537720 ~ 20545404 (+)
G4614 NA non-coding upstream 33065 18806524 ~ 18806901 (+)
G4601 NA non-coding upstream 61452 18778003 ~ 18778514 (+)
G4611 NA non-coding upstream 81834 18756760 ~ 18758132 (+)
G4608 NA non-coding upstream 122326 18716961 ~ 18717640 (+)
G4591 NA non-coding upstream 511959 18314554 ~ 18328007 (+)
G4617 NA non-coding downstream 640 18876110 ~ 18876899 (+)
G4719 NA non-coding downstream 14523 18889993 ~ 18890211 (+)
G4717 NA non-coding downstream 65757 18941227 ~ 18943398 (+)
G4742 NA non-coding downstream 114959 18990429 ~ 18990948 (+)
G4746 NA non-coding downstream 127805 19003275 ~ 19004516 (+)
G4612 NA other upstream 80108 18759375 ~ 18759858 (+)
LOC103034503 efhd1,LOC103034503,LOC107669899,LOC107741634,LOC107585735,LOC107564379 other upstream 417610 18041289 ~ 18422356 (+)
G4550 sik3 other upstream 766303 18071964 ~ 18073663 (+)
LOC103039709 NA other upstream 827863 18010178 ~ 18012103 (+)
G4219 ckm,ckmb,ckma,LOC107690449,LOC107683830,LOC107601735,LOC107743697,LOC107718278 other upstream 2216897 16619046 ~ 16623069 (+)
G4775 LOC108411134 other downstream 285261 19160731 ~ 19165631 (+)
LOC107197594 NA other downstream 1673721 20549191 ~ 20551635 (+)
LOC103037169 NA other downstream 1683053 20558523 ~ 20582874 (+)
G5026 NA other downstream 2108237 20983707 ~ 20999200 (+)
LOC103022859 fgf12,fgf12b,fgf12a,LOC108411839,LOC108278337,LOC107689585,LOC108436038 other downstream 3181052 22056522 ~ 22154926 (+)

Expression


Co-expression Network