G4608


Basic Information

Item Value
gene id G4608
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 18716961 ~ 18717640 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU6201
tcacactgtcacacaaacattcacacacccacacagtcacacacccacacaaacagtTACACATCCGCACAATTACACAAACAATTACACACCCTCACGAATAAACAATCACACTGTCACACAAACAATCACACATCCACACAAACAGTTACACACCCGCACAACTAAACATTCACAATGTCACACAAActctcacacacccacacaaacagtTACACATCCGCACAATTACACAAACAATTACACACCCGCACGACTAAACAATCACACTGTCACACAAACaatcacacacccacacaatcacacacccacacaaacagaTACACACTCGCACAATCACACAAACAATTACACACCTGCACTTGTCAACAATCACACTGTCACACAAACaatcacacacccacacaaacagtTACACACCCGCACAATTACACAAACAATTACACACCCGCACGACTAAACaatcacacacccacacagt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU6201 True 481 lncRNA 0.43 2 18716961 18717640

Neighbor

gene id symbol gene type direction distance location
LOC103035466 NA coding upstream 217830 18487006 ~ 18499131 (+)
trnag-ucc NA coding upstream 313185 18403705 ~ 18403776 (+)
trnaw-cca NA coding upstream 315836 18401054 ~ 18401125 (+)
LOC103034176 LOC108443019,LOC107663551,LOC107572208,LOC107557657,LOC107679443,LOC108277854 coding upstream 316823 18389428 ~ 18400138 (+)
LOC103036794 map4k1,LOC108443018,LOC107757316,LOC107679433,LOC101883459,LOC104956018 coding upstream 330642 18332339 ~ 18386319 (+)
LOC103038796 mtnr1ba,LOC108413652,LOC107745177,LOC107585812,LOC107705472,LOC107669925 coding downstream 188006 18905646 ~ 18929820 (+)
LOC103030891 LOC108278224,LOC107558831,LOC107705626 coding downstream 350823 19068463 ~ 19101318 (+)
LOC111192961 NA coding downstream 1123579 19841219 ~ 19841977 (+)
psmd2 psmd2 coding downstream 1803574 20521214 ~ 20536207 (+)
LOC107197593 NA coding downstream 1820080 20537720 ~ 20545404 (+)
G4591 NA non-coding upstream 388954 18314554 ~ 18328007 (+)
G4582 paf1 non-coding upstream 410709 18258571 ~ 18306252 (+)
G4587 NA non-coding upstream 410812 18305358 ~ 18306149 (+)
G4589 crx,LOC108443020,LOC107395012,LOC106935423,LOC106914190,LOC103155943,LOC107094494 non-coding upstream 414813 18298516 ~ 18302148 (+)
G4542 NA non-coding upstream 436348 18212156 ~ 18280613 (+)
G4611 NA non-coding downstream 39120 18756760 ~ 18758132 (+)
G4601 NA non-coding downstream 60363 18778003 ~ 18778514 (+)
G4614 NA non-coding downstream 88884 18806524 ~ 18806901 (+)
G4600 NA non-coding downstream 122326 18839966 ~ 18875470 (+)
G4616 NA non-coding downstream 138549 18856189 ~ 18858801 (+)
LOC103034503 efhd1,LOC103034503,LOC107669899,LOC107741634,LOC107585735,LOC107564379 other upstream 294605 18041289 ~ 18422356 (+)
G4550 sik3 other upstream 643298 18071964 ~ 18073663 (+)
LOC103039709 NA other upstream 704858 18010178 ~ 18012103 (+)
G4219 ckm,ckmb,ckma,LOC107690449,LOC107683830,LOC107601735,LOC107743697,LOC107718278 other upstream 2093892 16619046 ~ 16623069 (+)
G4221 NA other upstream 2171107 16542942 ~ 16545854 (+)
G4612 NA other downstream 41735 18759375 ~ 18759858 (+)
G4775 LOC108411134 other downstream 443091 19160731 ~ 19165631 (+)
LOC107197594 NA other downstream 1831551 20549191 ~ 20551635 (+)
LOC103037169 NA other downstream 1840883 20558523 ~ 20582874 (+)
G5026 NA other downstream 2266067 20983707 ~ 20999200 (+)

Expression


Co-expression Network