G4616


Basic Information

Item Value
gene id G4616
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 18856189 ~ 18858801 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU6215
ATGAGACTGTGTATGAGACTATGTGAGACTGTGCAAGACTATATGAGACTCCGAGATGTGTAAGACTGTGTAAGACTGCATGCAAGACTGTGAGACTGTGCGTAAGACTCTGAGACTGTGGGTGAGGCTCTATGAgactgtgtgtaagactgtgtgaGACTGTGCAAGACAGTATGAGACTGTGCGAGACTATATGAGACTGCTTGAGACTGTGAAAGACTGTATGAGACTGTGTGAGACTTTATGAGACTGTGTGGGACTCTATGAGACTTTATGAGACTGTGTAAGACTGCATGAGAGACTGTGTATAAGACTGTGTATGAGACTGCTTAAGACTGTGCAAGACTATATGAGACTGTGCAAGACTGTGTGAAACTATTTGattgtgtgtgagactgtgtgagaCTTTATGAGACTGTGTGAGACTGAGTGTGAGACTCTGTTAGACTGTGTATGAGACTGTGCGAGACTGTATGAGATTGTGTGAGGCTGTGCAAGACATTGTTAGACTGCGTTTGACTACATGTGAGGCTGTATGAGATGCTATGAGACTGTGTGAGGCTCTATGAGACTGTGTGTAAGACTGCGTGAGACTGTTCAAGACAGTATGAGACTGTGCAAGACTATATGAGACTGCTTGAGACTGTGAAAGACTATATGAGACGGTGCAAGACTGTGTGAAACTATTTGattgtgtgtgagactgtgtgagaCTTTATGAGACTTTATGAGACTGTGTGAGACTGCGTGTGAGACTCTGTTAGACTGTGTATGAGACTGTGCGAGACTGTATGAGACTGTGTGAGGCTGTGCACGACTGTGTTAGACTGCGTTTGACCACATGTGAGGCTCTGTGGGACTCTATGAGACTGTGTGAGACAGTGTACTGTATTAACAGTTTGAGATGGCCCAGATAAAGGTAGATGATAGTGTAGATGATGTGGAAACATGTGAAGGTCCATTAAATTACCAGTCAGTTCTCGTAGTCTGTGGTGTTGGATGTGAAGAAATGGGCAGTTTTATGGGGAGTTCAAATTTGAGGCACTCTAAAAAGGGTCAGATCATTAGGACCAGACAACTGGATCATTGGAGCATCTTCCAAATGGCTCAAAGGATTATGGGGGCTCCTGGTCAACAGTGGGAAATACCATGGTGAGCTCTGAATGCTCCAGAGGACCTGCTGCCTTGATCTGAGGCTCATCAGTTTGAATCCTGAgttatgctgcttctccattAGCAGCAGAAGTCCGAGAGAGTACAGTTGGCCATGCTAACTGGGGACTGAGGAGGGATCTGGATTTGCTGAAACATCTTGTTGCCAGTGGTGACAGATATGACAGGGAAGCTTCAGGGGTCTTATAGAGTTCATACCGTGGTGAGTTGGGTCTGTTTTGCTGCAGGAGGAAAGTGGGCGGCTAAACTAAGAATTCTTCCGCTGCTCTGACAGCAGCCCGAACTTCCCACCGTCATCAGATACCTTTTACTCAGCATGTTCGGCGGTTGACCCGTTTGAGATGTATAATGTTGGAAAGCTCCAGTgtgcagagcagcagcagcagcagcagcagcggcatcCATCCGGCAGTGCTTCAGGGTTAATGACTTTAGATCAGTCCGCATGTTTCTGCTCCCAGAACTCCTCACCTCCCGACTCCTGTCCAATTACCAGCCTACTTAACCGAAAGATCCCTCTCTGTCCAGGTGGCTCTTATTTAGAGCTGTGATTTATCGCCGTGAGGGTGAACTGAGATTTGCTAAAAAGAAATACTTCAGCATTTTTTCTTTTCCGCACTCTGCTGCATCCGTCGGGTACAGTGACTTGACATTTACTGTAAAGtagaaaatagatttttttgtgggGGGTGGGGAACTTGTTTGGAGTTTGCTCTCTACTTCAGTTGATTTCAGACACCCTCGTTACCTAAGACTCTTCCCCATAGCAGCATCAAGCAAGGCCGTCCTTCTAAACATGAGGTGACACTCCAGCACAGCATCACTTCTGAGCctcaacatgcttggaggagaacactaactgctaATTCTGTCACATTAGCTACTAGGAAGCCATGCTACCCAACACTTAAAAAAGCTGAGGGAACGGGGGAGAGGGAGATccatcggtaacactttacttggatggtccattttatggccttgttgaatctcaactgacattcaactaacactgaattgaatgtccattaaattgaacttaaccctatgttgaatgtaaatgattcaaaatagaacctaaccgtacacctaaccctaaccttaacccttaatcaaccataaaatcaaaccctacacctaaccctaaccttaacccttaatcaaccctaaaatcaaaccctacacctaaccctaaccttaacccttaatcaaccatacaatctaaccctacacctaactctaaccttaacccttaaatcaaccctaaaatctaaccctacacctaaccttaacccttaatccaccataaaatca

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU6215 True 2487 lncRNA 0.45 3 18856189 18858801

Neighbor

gene id symbol gene type direction distance location
LOC103035466 NA coding upstream 357058 18487006 ~ 18499131 (+)
trnag-ucc NA coding upstream 452413 18403705 ~ 18403776 (+)
trnaw-cca NA coding upstream 455064 18401054 ~ 18401125 (+)
LOC103034176 LOC108443019,LOC107663551,LOC107572208,LOC107557657,LOC107679443,LOC108277854 coding upstream 456051 18389428 ~ 18400138 (+)
LOC103036794 map4k1,LOC108443018,LOC107757316,LOC107679433,LOC101883459,LOC104956018 coding upstream 469870 18332339 ~ 18386319 (+)
LOC103038796 mtnr1ba,LOC108413652,LOC107745177,LOC107585812,LOC107705472,LOC107669925 coding downstream 46845 18905646 ~ 18929820 (+)
LOC103030891 LOC108278224,LOC107558831,LOC107705626 coding downstream 209662 19068463 ~ 19101318 (+)
LOC111192961 NA coding downstream 982418 19841219 ~ 19841977 (+)
psmd2 psmd2 coding downstream 1662413 20521214 ~ 20536207 (+)
LOC107197593 NA coding downstream 1678919 20537720 ~ 20545404 (+)
G4614 NA non-coding upstream 49288 18806524 ~ 18806901 (+)
G4601 NA non-coding upstream 77675 18778003 ~ 18778514 (+)
G4611 NA non-coding upstream 98057 18756760 ~ 18758132 (+)
G4608 NA non-coding upstream 138549 18716961 ~ 18717640 (+)
G4591 NA non-coding upstream 528182 18314554 ~ 18328007 (+)
G4617 NA non-coding downstream 17309 18876110 ~ 18876899 (+)
G4719 NA non-coding downstream 31192 18889993 ~ 18890211 (+)
G4717 NA non-coding downstream 82426 18941227 ~ 18943398 (+)
G4742 NA non-coding downstream 131628 18990429 ~ 18990948 (+)
G4746 NA non-coding downstream 144474 19003275 ~ 19004516 (+)
G4612 NA other upstream 96331 18759375 ~ 18759858 (+)
LOC103034503 efhd1,LOC103034503,LOC107669899,LOC107741634,LOC107585735,LOC107564379 other upstream 433833 18041289 ~ 18422356 (+)
G4550 sik3 other upstream 782526 18071964 ~ 18073663 (+)
LOC103039709 NA other upstream 844086 18010178 ~ 18012103 (+)
G4219 ckm,ckmb,ckma,LOC107690449,LOC107683830,LOC107601735,LOC107743697,LOC107718278 other upstream 2233120 16619046 ~ 16623069 (+)
G4775 LOC108411134 other downstream 301930 19160731 ~ 19165631 (+)
LOC107197594 NA other downstream 1690390 20549191 ~ 20551635 (+)
LOC103037169 NA other downstream 1699722 20558523 ~ 20582874 (+)
G5026 NA other downstream 2124906 20983707 ~ 20999200 (+)
LOC103022859 fgf12,fgf12b,fgf12a,LOC108411839,LOC108278337,LOC107689585,LOC108436038 other downstream 3197721 22056522 ~ 22154926 (+)

Expression


Co-expression Network