G4719


Basic Information

Item Value
gene id G4719
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 18889993 ~ 18890211 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU6342
cattgtagattctcactgaagcatcaaaactatgaatgaacacatgtggagttttatgtacttaacaaaaaaatgagctgaacctccacagtcaccggacctgaacccaatccagatttgaggtttggggtgagctggagcacagagtgaagaaggcaaaggagcaacaagtgctaataaacacctctgggaactccttccttcaagactgttggaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU6342 True 219 lncRNA 0.43 1 18889993 18890211

Neighbor

gene id symbol gene type direction distance location
fat3 fat3,fat3a,LOC107564369 coding upstream 19174 18666879 ~ 18870819 (+)
LOC103035466 NA coding upstream 390862 18487006 ~ 18499131 (+)
trnag-ucc NA coding upstream 486217 18403705 ~ 18403776 (+)
trnaw-cca NA coding upstream 488868 18401054 ~ 18401125 (+)
LOC103034176 LOC108443019,LOC107663551,LOC107572208,LOC107557657,LOC107679443,LOC108277854 coding upstream 489855 18389428 ~ 18400138 (+)
LOC103038796 mtnr1ba,LOC108413652,LOC107745177,LOC107585812,LOC107705472,LOC107669925 coding downstream 15435 18905646 ~ 18929820 (+)
LOC103030891 LOC108278224,LOC107558831,LOC107705626 coding downstream 178252 19068463 ~ 19101318 (+)
LOC111192961 NA coding downstream 951008 19841219 ~ 19841977 (+)
psmd2 psmd2 coding downstream 1631003 20521214 ~ 20536207 (+)
LOC107197593 NA coding downstream 1647509 20537720 ~ 20545404 (+)
G4617 NA non-coding upstream 13094 18876110 ~ 18876899 (+)
G4600 NA non-coding upstream 14523 18839966 ~ 18875470 (+)
G4616 NA non-coding upstream 31192 18856189 ~ 18858801 (+)
G4614 NA non-coding upstream 83092 18806524 ~ 18806901 (+)
G4601 NA non-coding upstream 111479 18778003 ~ 18778514 (+)
G4717 NA non-coding downstream 51016 18941227 ~ 18943398 (+)
G4742 NA non-coding downstream 100218 18990429 ~ 18990948 (+)
G4746 NA non-coding downstream 113064 19003275 ~ 19004516 (+)
G4751 NA non-coding downstream 151181 19041392 ~ 19044373 (+)
G4753 NA non-coding downstream 211397 19101608 ~ 19102049 (+)
G4612 NA other upstream 130135 18759375 ~ 18759858 (+)
LOC103034503 efhd1,LOC103034503,LOC107669899,LOC107741634,LOC107585735,LOC107564379 other upstream 467637 18041289 ~ 18422356 (+)
G4550 sik3 other upstream 816330 18071964 ~ 18073663 (+)
LOC103039709 NA other upstream 877890 18010178 ~ 18012103 (+)
G4219 ckm,ckmb,ckma,LOC107690449,LOC107683830,LOC107601735,LOC107743697,LOC107718278 other upstream 2266924 16619046 ~ 16623069 (+)
G4775 LOC108411134 other downstream 270520 19160731 ~ 19165631 (+)
LOC107197594 NA other downstream 1658980 20549191 ~ 20551635 (+)
LOC103037169 NA other downstream 1668312 20558523 ~ 20582874 (+)
G5026 NA other downstream 2093496 20983707 ~ 20999200 (+)
LOC103022859 fgf12,fgf12b,fgf12a,LOC108411839,LOC108278337,LOC107689585,LOC108436038 other downstream 3166311 22056522 ~ 22154926 (+)

Expression


Co-expression Network