G4775 (LOC108411134)


Basic Information

Item Value
gene id G4775
gene name LOC108411134
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 19160731 ~ 19165631 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU6404
tattaccAGACCAATCAATGCATAAGAATGTATTAGAAACTCATCctgaatattaattttaatttttaaattgatttagaACTTTAATTTGGATACTATTCTGGATATGattgttattagaacttcatgcTGGATACTATAATTGTTCTAGCTagcttgttctctctctctatgataGACGAAGCGCTCGAAGTCTGCGGATATGTGGAGGGAGGACTCTCTGGAGGTTTCTCTGTCTGACGCCAGTCTGGAGAACCTCACCAGTATGGAGGAGATCGCAGACGTGCCGGACTCCACACGGGCTAACTCACTGGATGAGCTGTACGGACCGCAGAGCCACGGGCGCTACGCTAAACGCCGCAAGAGCGGCGCTATGGGGGCGGACAGCGAGGAGGAAAAGATTCTCTCTCCATGTGATGATGACGGCACGAATTACGGAGCCTTCACCCTGCCCTGCCGCCGCTCACACTGCCTGTCAGAGGGGCTCACCAGCTACCAGGGTGCCATGCAGGGCAGACGGGCACAAACCATACAGgatgtCACGGCGGGTGACGGCAGCGAGATGGAGGACAGTGGGATTGATGGGCTGATTGGAGACAGCGAGGTGCCCCAGCCCCGCCGCTATAAGGCAATGTCTGCATCGTTCTCTGCTTACTCCACATCAGTAGGGGGTGCCTTCGCCGGCAGCgacagtggcagcagcagcgggGCTGGAGCTGGAGAAGGTGTGCAGGGTGTGTACGAGAACTTCCGGCAGGAGCTGGAGAAGAGCGTGTGCCAGATGGAGCCGGCGGAGAAGCGGGCGTCGGGCTTGAGCGATGAGCAGAGCAGCATCACGCTAAGCTCCGCCTACCACACAGAGCNNN

Function

NR:

description
PREDICTED: T-lymphoma invasion and metastasis-inducing protein 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU6404 True 866 TUCP 0.54 3 19160731 19165631

Neighbor

gene id symbol gene type direction distance location
LOC103030891 LOC108278224,LOC107558831,LOC107705626 coding upstream 59413 19068463 ~ 19101318 (+)
LOC103038796 mtnr1ba,LOC108413652,LOC107745177,LOC107585812,LOC107705472,LOC107669925 coding upstream 230911 18905646 ~ 18929820 (+)
fat3 fat3,fat3a,LOC107564369 coding upstream 289912 18666879 ~ 18870819 (+)
LOC103035466 NA coding upstream 661600 18487006 ~ 18499131 (+)
trnag-ucc NA coding upstream 756955 18403705 ~ 18403776 (+)
LOC111192961 NA coding downstream 675588 19841219 ~ 19841977 (+)
psmd2 psmd2 coding downstream 1355583 20521214 ~ 20536207 (+)
LOC107197593 NA coding downstream 1372089 20537720 ~ 20545404 (+)
LOC103036360 NA coding downstream 1379909 20545540 ~ 20548431 (+)
LOC111192413 NA coding downstream 1389828 20555459 ~ 20557658 (+)
G4761 NA non-coding upstream 8684 19104769 ~ 19152047 (+)
G4753 NA non-coding upstream 58682 19101608 ~ 19102049 (+)
G4751 NA non-coding upstream 116358 19041392 ~ 19044373 (+)
G4746 NA non-coding upstream 156215 19003275 ~ 19004516 (+)
G4742 NA non-coding upstream 169783 18990429 ~ 18990948 (+)
G4809 NA non-coding downstream 113140 19278771 ~ 19279016 (+)
G4853 NA non-coding downstream 473745 19639376 ~ 19648833 (+)
G4892 LOC107374453 non-coding downstream 567890 19733521 ~ 19735640 (+)
G4902 NA non-coding downstream 619723 19785354 ~ 19785628 (+)
G4919 NA non-coding downstream 1031212 20196843 ~ 20197053 (+)
G4612 NA other upstream 400873 18759375 ~ 18759858 (+)
LOC103034503 efhd1,LOC103034503,LOC107669899,LOC107741634,LOC107585735,LOC107564379 other upstream 738375 18041289 ~ 18422356 (+)
G4550 sik3 other upstream 1087068 18071964 ~ 18073663 (+)
LOC103039709 NA other upstream 1148628 18010178 ~ 18012103 (+)
G4219 ckm,ckmb,ckma,LOC107690449,LOC107683830,LOC107601735,LOC107743697,LOC107718278 other upstream 2537662 16619046 ~ 16623069 (+)
LOC107197594 NA other downstream 1383560 20549191 ~ 20551635 (+)
LOC103037169 NA other downstream 1392892 20558523 ~ 20582874 (+)
G5026 NA other downstream 1818076 20983707 ~ 20999200 (+)
LOC103022859 fgf12,fgf12b,fgf12a,LOC108411839,LOC108278337,LOC107689585,LOC108436038 other downstream 2890891 22056522 ~ 22154926 (+)
LOC103043812 gria4a,gria4,LOC107725765,LOC107670112,LOC107689577,LOC107566895,LOC107560842,LOC107756206,LOC107756230 other downstream 3241925 22407556 ~ 22524746 (+)

Expression


Co-expression Network