LOC103038464


Basic Information

Item Value
gene id LOC103038464
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 19652786 ~ 19655913 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU6525
GAGCTCAGATGACTAATCAGTCAGCATGGATTCGGATCTAGCTGCAGctcgtGATAAAGAGGGAGATGATGTGCAGGAGGCTGAAGGCCAGACCTCAGCTTCTGAAAGCGAAGAGCAGGATACAAAGaacagaaagaggaagaaaaagaggaagaacacggtaaagaagaaaaagagacgTCTGGACAAGAAGAAAAAGGAAACATCTGGAAATCAGCAGctggatagagagagggaggaagcagagagagaaaaagggagatcCAAGCTTTTTCCAGATGACCCAGGGCGGAATGGCCTGATGGAAGGGGCGGTTGAGAGGTGGAGCTTATGCCTCAACCAATCCAGACGCTAAGTCAACACGTAGGACCAGAGAGGAGTCTTCGTAAAAAATAGTGAACGAGCAGGAATTATGATCTGCTAATTATTACACAAATGGTGTTTCTTCTTAATAA
>XM_007247675.3
TCTCAGTAGGCTTGTGTCTCAGAGGAGCTCAGATGACTAATCAGTCAGCATGGATTCGGATCTAGCTGCAGctcgtGATAAAGAGGGAGATGATGTGCAGGAGGCTGAAGGCCAGCAGGACCTCAGCTTCTGAAAGCGAAGAGCAGGATACAAAGaacagaaagaggaagaaaaagaggaagaacacggtaaagaagaaaaagagacgTCTGGACAAGAAGAAAAAGGAAACATCTGGAAATCAGCAGctggatagagagagggaggaagcagagagagaaaaagggagatcCAAGCTTTTTCCAGATGACCCAGGGCGGAATGGCCTGATGGAAGGGGCGGGGTCCTCTAGTCCTAGGGGCGAAGGCAGGTTGAGAGGTGGAGCTTATGCCTCAACCAATCCAGACGCTAAGTCAACACGTAGGACCAGAGAGGAGTCTTCGTAAAAAATAGTGAACGAGCAGGAATTATGATCTGCTAATTATTACACAAATGGTGTTTCTTCTTAATAAACAGAGGAAGATGCTTAAGTTCTAATTTCAGTACTGTTTTAATTATCAATCATGTCCTGACTGActtgttcatattcataaagttttgagagttcagaaatcaa
>XM_015605446.2
TCTCAGTAGGCTTGTGTCTCAGAGGAGCTCAGATGACTAATCAGTCAGCATGGATTCGGATCTAGCTGCAGctcgtGATAAAGAGGGAGATGATGTGCAGGAGGCTGAAGGCCAGACCTCAGCTTCTGAAAGCGAAGAGCAGGATACAAAGaacagaaagaggaagaaaaagaggaagaacacggtaaagaagaaaaagagacgTCTGGACAAGAAGAAAAAGGAAACATCTGGAAATCAGCAGctggatagagagagggaggaagcagagagagaaaaagggagatcCAAGCTTTTTCCAGATGACCCAGGGCGGAATGGCCTGATGGAAGGGGCGGGGTCCTCTAGTCCTAGGGGCGAAGGCAGGTTGAGAGGTGGAGCTTATGCCTCAACCAATCCAGACGCTAAGTCAACACGTAGGACCAGAGAGGAGTCTTCGTAAAAAATAGTGAACGAGCAGGAATTATGATCTGCTAATTATTACACAAATGGTGTTTCTTCTTAATAAACAGAGGAAGATGCTTAAGTTCTAATTTCAGTACTGTTTTAATTATCAATCATGTCCTGACTGActtgttcatattcataaagttttgagagttcagaaatcaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU6525 False 455 TUCP 0.44 5 19652890 19655889
XM_007247675.3 True 616 mRNA 0.44 4 19652786 19655913
XM_015605446.2 False 612 mRNA 0.44 4 19652786 19655913

Neighbor

gene id symbol gene type direction distance location
igsf11 igsf11,LOC107692255,LOC106580804 coding downstream 19613 19451779 ~ 19633173 (-)
ccdc150 NA coding downstream 585606 19050543 ~ 19067180 (-)
slc36a4 LOC108414615 coding downstream 612344 19007027 ~ 19040442 (-)
kcnj13 kcnj13 coding downstream 1202868 18422832 ~ 18449918 (-)
trnap-agg NA coding downstream 1251153 18401562 ~ 18401633 (-)
LOC107197597 NA coding upstream 2716 19658629 ~ 19684363 (-)
LOC103039500 lrfn1,LOC108440319,LOC108277437,LOC107733400 coding upstream 218168 19874081 ~ 20155721 (-)
LOC103044023 NA coding upstream 836659 20492572 ~ 20518475 (-)
clcn2 NA coding upstream 982493 20638406 ~ 20661764 (-)
LOC103042786 LOC108411335 coding upstream 1111356 20767269 ~ 20891792 (-)
G4868 NA non-coding downstream 69361 19582534 ~ 19583425 (-)
G4866 NA non-coding downstream 82144 19570043 ~ 19570642 (-)
G4839 NA non-coding downstream 239800 19412655 ~ 19412986 (-)
G4814 NA non-coding downstream 266322 19279661 ~ 19386464 (-)
G4795 NA non-coding downstream 399066 19236527 ~ 19253720 (-)
G4886 NA non-coding upstream 693 19656606 ~ 19656898 (-)
LOC111192398 LOC103397171,LOC107374453 non-coding upstream 77553 19733466 ~ 19734675 (-)
G4917 NA non-coding upstream 514633 20170546 ~ 20170825 (-)
G4921 NA non-coding upstream 593916 20249829 ~ 20250345 (-)
G4931 NA non-coding upstream 645949 20301862 ~ 20302407 (-)
LOC103038769 NA other downstream 3964 19639365 ~ 19648822 (-)
LOC103031959 NA other downstream 1426782 18196580 ~ 18226004 (-)
G4621 NA other downstream 1612020 18030362 ~ 18040766 (-)
LOC103040336 mpzl2 other downstream 1654037 17983885 ~ 17998749 (-)
ercc2 ercc2,LOC107743694,LOC107601732 other downstream 2998818 16644492 ~ 16653968 (-)
LOC111192876 NA other upstream 830681 20486594 ~ 20492524 (-)
G5095 eif4g1 other upstream 974312 20630225 ~ 20637068 (-)
inppl1 inppl1,inppl1a,LOC108261207 other upstream 2260453 21916366 ~ 21940806 (-)
LOC111192507 NA other upstream 2290873 21946786 ~ 21961465 (-)
G5396 NA other upstream 2475321 22131234 ~ 22200308 (-)

Expression


Co-expression Network