G4951


Basic Information

Item Value
gene id G4951
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 20485825 ~ 20486165 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU6625
GGGCTCTAagtggtcatgtagcttgccatcagctgctggagccctgagagagcacaattggccttgctctctctgggtgggtagatggcactttttcccctcatcactcctagggtgatgtcgatcaacacaaggcgtctgtgagctgatgtatcagagccaagtcgctgcgctttcctccgagtgcgctgtgatgctactctgcaatgttgcatcagcatcagcagttcgaaaagtggtggtggctgacttcacatgtgttgaaaaaggcatgtgctagtcttcaccctccttgtgtgtgttttggcatcaatagtgatgggggatatacagctgagtag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU6625 True 341 lncRNA 0.32 1 20485825 20486165

Neighbor

gene id symbol gene type direction distance location
LOC111192961 NA coding upstream 643848 19841219 ~ 19841977 (+)
LOC103030891 LOC108278224,LOC107558831,LOC107705626 coding upstream 1384507 19068463 ~ 19101318 (+)
LOC103038796 mtnr1ba,LOC108413652,LOC107745177,LOC107585812,LOC107705472,LOC107669925 coding upstream 1556005 18905646 ~ 18929820 (+)
fat3 fat3,fat3a,LOC107564369 coding upstream 1615006 18666879 ~ 18870819 (+)
LOC103035466 NA coding upstream 1986694 18487006 ~ 18499131 (+)
psmd2 psmd2 coding downstream 35049 20521214 ~ 20536207 (+)
LOC107197593 NA coding downstream 51555 20537720 ~ 20545404 (+)
LOC103036360 NA coding downstream 59375 20545540 ~ 20548431 (+)
LOC111192413 NA coding downstream 69294 20555459 ~ 20557658 (+)
LOC111192969 NA coding downstream 85237 20571402 ~ 20575427 (+)
G4949 NA non-coding upstream 31332 20452126 ~ 20454493 (+)
G4940 NA non-coding upstream 100570 20384764 ~ 20385255 (+)
LOC111192871 NA non-coding upstream 105530 20379244 ~ 20380295 (+)
G4932 NA non-coding upstream 180900 20304689 ~ 20304925 (+)
G4930 NA non-coding upstream 183396 20301862 ~ 20302429 (+)
G4994 NA non-coding downstream 217595 20703760 ~ 20704500 (+)
G5003 NA non-coding downstream 271010 20757175 ~ 20762971 (+)
G5012 NA non-coding downstream 396646 20882811 ~ 20883093 (+)
G5028 NA non-coding downstream 496078 20982243 ~ 20982748 (+)
G5036 NA non-coding downstream 601809 21087974 ~ 21160121 (+)
G4775 LOC108411134 other upstream 1320194 19160731 ~ 19165631 (+)
G4612 NA other upstream 1725967 18759375 ~ 18759858 (+)
LOC103034503 efhd1,LOC103034503,LOC107669899,LOC107741634,LOC107585735,LOC107564379 other upstream 2063469 18041289 ~ 18422356 (+)
G4550 sik3 other upstream 2412162 18071964 ~ 18073663 (+)
LOC103039709 NA other upstream 2473722 18010178 ~ 18012103 (+)
LOC107197594 NA other downstream 63026 20549191 ~ 20551635 (+)
LOC103037169 NA other downstream 72358 20558523 ~ 20582874 (+)
G5026 NA other downstream 497542 20983707 ~ 20999200 (+)
LOC103022859 fgf12,fgf12b,fgf12a,LOC108411839,LOC108278337,LOC107689585,LOC108436038 other downstream 1570357 22056522 ~ 22154926 (+)
LOC103043812 gria4a,gria4,LOC107725765,LOC107670112,LOC107689577,LOC107566895,LOC107560842,LOC107756206,LOC107756230 other downstream 1921391 22407556 ~ 22524746 (+)

Expression


Co-expression Network