Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC111192876 |
| gene name | NA |
| gene type | misc |
| species | mexican tetra (Astyanax mexicanus) |
| category of species | ornamental fish |
| Item | Value |
|---|---|
| chromosome id | NC_035897.1 |
| NCBI id | CM008300.1 |
| chromosome length | 26953843 |
| location | 20486594 ~ 20492524 (-) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU6632 | True | 587 | lncRNA | 0.31 | 6 | 20486594 | 20492314 |
| XR_002650156.1 | False | 150 | ncRNA | 0.44 | 3 | 20492031 | 20492524 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC103039500 | lrfn1,LOC108440319,LOC108277437,LOC107733400 | coding | downstream | 330873 | 19874081 ~ 20155721 (-) |
| LOC107197597 | NA | coding | downstream | 802231 | 19658629 ~ 19684363 (-) |
| igsf11 | igsf11,LOC107692255,LOC106580804 | coding | downstream | 853421 | 19451779 ~ 19633173 (-) |
| ccdc150 | NA | coding | downstream | 1419414 | 19050543 ~ 19067180 (-) |
| slc36a4 | LOC108414615 | coding | downstream | 1446152 | 19007027 ~ 19040442 (-) |
| LOC103044023 | NA | coding | upstream | 48 | 20492572 ~ 20518475 (-) |
| clcn2 | NA | coding | upstream | 145882 | 20638406 ~ 20661764 (-) |
| LOC103042786 | LOC108411335 | coding | upstream | 274745 | 20767269 ~ 20891792 (-) |
| chrd | chrd,LOC107681909,LOC107709376 | coding | upstream | 429821 | 20922345 ~ 20935211 (-) |
| LOC103031705 | NA | coding | upstream | 461479 | 20954003 ~ 20968088 (-) |
| G4937 | NA | non-coding | downstream | 106689 | 20379286 ~ 20379905 (-) |
| G4934 | NA | non-coding | downstream | 127406 | 20358900 ~ 20359188 (-) |
| G4931 | NA | non-coding | downstream | 184187 | 20301862 ~ 20302407 (-) |
| G4921 | NA | non-coding | downstream | 236249 | 20249829 ~ 20250345 (-) |
| G4917 | NA | non-coding | downstream | 315769 | 20170546 ~ 20170825 (-) |
| G4964 | NA | non-coding | upstream | 28693 | 20521217 ~ 20524904 (-) |
| G4976 | NA | non-coding | upstream | 47938 | 20540462 ~ 20540940 (-) |
| G4972 | NA | non-coding | upstream | 57877 | 20550401 ~ 20554653 (-) |
| G4981 | NA | non-coding | upstream | 75310 | 20567834 ~ 20578457 (-) |
| G4982 | NA | non-coding | upstream | 78560 | 20571084 ~ 20574479 (-) |
| LOC103038464 | NA | other | downstream | 830681 | 19652786 ~ 19655913 (-) |
| LOC103038769 | NA | other | downstream | 837772 | 19639365 ~ 19648822 (-) |
| LOC103031959 | NA | other | downstream | 2260590 | 18196580 ~ 18226004 (-) |
| G4621 | NA | other | downstream | 2445828 | 18030362 ~ 18040766 (-) |
| LOC103040336 | mpzl2 | other | downstream | 2487845 | 17983885 ~ 17998749 (-) |
| G5095 | eif4g1 | other | upstream | 137701 | 20630225 ~ 20637068 (-) |
| inppl1 | inppl1,inppl1a,LOC108261207 | other | upstream | 1423842 | 21916366 ~ 21940806 (-) |
| LOC111192507 | NA | other | upstream | 1454262 | 21946786 ~ 21961465 (-) |
| G5396 | NA | other | upstream | 1638710 | 22131234 ~ 22200308 (-) |
| G5407 | NA | other | upstream | 1663261 | 22155785 ~ 22158185 (-) |
