G5036


Basic Information

Item Value
gene id G5036
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 21087974 ~ 21160121 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU6761
ttttaaatgttgactaactaactaaaCATCTAAATTGTTATTTCTAGAAAAAAGGTAGATATTGTTGAAACTTTTAAATTGTTCGTTGTAAttgaaactcattatttgaaagttcttacatctccctcatctgttGACTTGCCatggtatagatccctccctcagacaaagtctgtaCTGTccgaggttctcaaccaaagtgagttttgcataatatatgtcccctttaatgcTAGTTGTAGCTTAAACATAGTAAATGCAGttttcatttaaatgaataCATAGTTTTAACAAGAACATATTTAAGAGTTTTCGGAAGTTTCTAGCATTTAAGAAGTTTTAACAAAAGGTACACAAGTTTTAAAAATCACTTTCACTTATGGTACTTGTTAATGAAACTAAACTGTGGCTCAGTGTGCGAAATGTAACttaaattgattaaattattttttaaattagtttaatgcttaaaatgtaaaatgttggaCTCCTGCCCTAAAAACTggaaatatgcatttttttgtacaccacaatattgtgttttaaCAGAGAAAATACAGTTCAAACCTCTTCTGAataactgatgttttttctgatGTTTACTAATGCTTCCCTTGGTTAAGGGCTGTATGCTATGACATAACAATCAGTATCATTTAGAAATGAATGTCTTAATGATGATGAATGTGATTCTAGACATTGCGTAGTGCATTTGGGTTGACAAGTGatgttaaaagtgtattttgtgTTAACATCGCTGGAATGTTGTTAAGTTCACCACTCTGATTGTGCCACTGGCCTTAATTTGATGCTAATTAAGCATCTGACACGTCTTAAAGGAGCTAAATGGTGGAATTTTGGGTGAATTttggtgcttttttttgtttgtttctttagtttttaggatTGATACCTTTGAATCCAGGATCATGctgcttcagcatcagcagccggagtccgagagagagcacaattgcctTTAACATCACTCCTAGTGTGATGATGGTCATCACAGGCCTTTCTTAGCTGaggagtgcgctgtgatgctacccaGTAATGTTGCagtacatcagcagcagtttgaaaagaggtggagcctgacttcacatgtatgggAGGAGGCATTCGCTAGGGGCCATTACTAACTAGTGATTGGGTgattatatttaaacagggtTTGAGTATATAGGCCCTTCAAAATTccgtggctcttgatacatcacaaagatttgctgtcttggtcacagatgcgccagcaagacgtgcaccaa

Function

GO:

id name namespace
GO:0036344 platelet morphogenesis biological_process
GO:0030220 platelet formation biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU6761 True 1271 lncRNA 0.37 2 21087974 21160121

Neighbor

gene id symbol gene type direction distance location
LOC103030875 LOC108413394,LOC108278199 coding upstream 1238 21008121 ~ 21086736 (+)
LOC103033175 NA coding upstream 346981 20732285 ~ 20740993 (+)
fam131a fam131a,LOC102799247 coding upstream 363400 20700702 ~ 20724574 (+)
LOC111192490 LOC108277610 coding upstream 398617 20671727 ~ 20689357 (+)
eif4g1 LOC108280304,LOC103370583 coding upstream 450026 20585146 ~ 20637948 (+)
LOC103042479 ecel1 coding downstream 29620 21189741 ~ 21245822 (+)
LOC103042160 LOC108412514 coding downstream 88732 21248853 ~ 21261198 (+)
clpb clpb,LOC107568463,LOC108261447,LOC108276567 coding downstream 664806 21824927 ~ 21890977 (+)
phox2a phox2a,LOC107738288,LOC107679437 coding downstream 748152 21908273 ~ 21913768 (+)
LOC103025167 NA coding downstream 872458 22032579 ~ 22037644 (+)
G5028 NA non-coding upstream 105226 20982243 ~ 20982748 (+)
G5012 NA non-coding upstream 204881 20882811 ~ 20883093 (+)
G5003 NA non-coding upstream 325003 20757175 ~ 20762971 (+)
G4994 NA non-coding upstream 383474 20703760 ~ 20704500 (+)
G4951 NA non-coding upstream 601809 20485825 ~ 20486165 (+)
LOC103030556 NA non-coding downstream 101614 21261735 ~ 21269163 (+)
G5069 NA non-coding downstream 494916 21655037 ~ 21658746 (+)
G5067 arap1,LOC107729594,LOC107557643,LOC107701599 non-coding downstream 502369 21662490 ~ 21669652 (+)
G5329 NA non-coding downstream 756461 21916582 ~ 21920497 (+)
G5331 inppl1,LOC108261207,LOC107731861 non-coding downstream 762999 21923120 ~ 21924879 (+)
G5026 NA other upstream 88774 20983707 ~ 20999200 (+)
LOC103037169 NA other upstream 505100 20558523 ~ 20582874 (+)
LOC107197594 NA other upstream 536339 20549191 ~ 20551635 (+)
G4775 LOC108411134 other upstream 1922343 19160731 ~ 19165631 (+)
G4612 NA other upstream 2328116 18759375 ~ 18759858 (+)
LOC103022859 fgf12,fgf12b,fgf12a,LOC108411839,LOC108278337,LOC107689585,LOC108436038 other downstream 896401 22056522 ~ 22154926 (+)
LOC103043812 gria4a,gria4,LOC107725765,LOC107670112,LOC107689577,LOC107566895,LOC107560842,LOC107756206,LOC107756230 other downstream 1247435 22407556 ~ 22524746 (+)
LOC103041654 chordc1,LOC108412466 other downstream 1482489 22642610 ~ 22673984 (+)
LOC103045948 grm5b,LOC108411478,LOC107670133,LOC107737424,LOC107731813,LOC107669866 other downstream 1548791 22708912 ~ 22758213 (+)
G5620 LOC107694033,LOC107752375,LOC107592755,LOC105030986 other downstream 1742645 22902766 ~ 22923081 (+)

Expression


Co-expression Network