G5333 (inppl1,inppl1a,LOC108261207,LOC107710497)


Basic Information

Item Value
gene id G5333
gene name inppl1,inppl1a,LOC108261207,LOC107710497
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 21932689 ~ 21939206 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU7114
CTCGTTTCCGGATGTCAGGTGGCAGTTAACAAAGCCGAATGATGTCCCATTAAACATGAAGGACACGCCCACTGCCCCCTTattgcCCAGTGTATTGGCTATTCCTGTTTTGACGCTGGACATCCCGACGTGACTGATACGGTTCTCATGTTCCGGTTTTACCAGAACCACAATTTTTATATTCCACAGAGTCTGCACAGCCACCGGCTTGTAGTCGATCTCAGTGTAGTCTTTCAGAGCAGCTCGCAGGTTCTCCACCCATTCTTTATCACAGACAGAGTTCTCTTGGGTTCCGAACACATAGATGTCGTGAGGAATTGTGACCGTCATCTCGTCCAGCGTTTTCCCCAAACCTCGTGATAAAAGCCATGAGCTCAACATCTTTGGAGAAGGAACACTGCCCATGTTCCACGTCCCTATGAATATAGAGATCATATCAGGCTCGTCCTGGTTGGAATGCTTGTTCTTCATCAGCTGCAGGAGTTGGCAGAAAGCTTCCCTTTTTTTAGCACTCGCAAAGATGAAGTCTTTCCTCTGGCTCTTGTCCTTTTCCTTCTCAAAAACAATGCCCAACTTATTGGGCATCCTCTGGGACTTTATCAGCTGCCGAATCTTGTCGTGGGTAAAGGTGGTCCAGTCCTCCTGAGAGTCCTTCATCTTCTTCATCACCACCAGCTTTCCTCCCTCTACATCTACACTGAGCGTGTGTTTCTGGCTCTTCCCGATCTTCGTTAGATCAGCCAGGTACACGTCCAGCTTTACCTGTTTGACACACACTAGCATAATCACTCAAAAAAGACATTAAGAAACTTCAATGGTAACCTATTAATCTTAGGCTAATACACTGCAGGCATTTGTATTGTTACAATATAATACATGAGCACACACAATAAATGGACAGAACAAGAACTGTTTTATCATACATGTTTA

Function

symbol description
inppl1a Predicted to enable actin binding activity and hydrolase activity. Acts upstream of or within BMP signaling pathway; negative regulation of fibroblast growth factor receptor signaling pathway; and negative regulation of neutrophil chemotaxis. Predicted to be located in nuclear speck. Is expressed in blastoderm and blastodisc. Human ortholog(s) of this gene implicated in hypertension; obesity; and type 2 diabetes mellitus. Orthologous to human INPPL1 (inositol polyphosphate phosphatase like 1).
inppl1 Enables SH2 domain binding activity. Involved in actin filament organization; endochondral ossification; and endocytosis. Located in Golgi apparatus and cytosol. Implicated in hypertension; obesity; and type 2 diabetes mellitus.

NR:

description
PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU7114 True 930 lncRNA 0.45 6 21932689 21939206

Neighbor

gene id symbol gene type direction distance location
phox2a phox2a,LOC107738288,LOC107679437 coding upstream 18921 21908273 ~ 21913768 (+)
clpb clpb,LOC107568463,LOC108261447,LOC108276567 coding upstream 41712 21824927 ~ 21890977 (+)
LOC103042160 LOC108412514 coding upstream 671491 21248853 ~ 21261198 (+)
LOC103042479 ecel1 coding upstream 686867 21189741 ~ 21245822 (+)
LOC103030875 LOC108413394,LOC108278199 coding upstream 845953 21008121 ~ 21086736 (+)
LOC103025167 NA coding downstream 93373 22032579 ~ 22037644 (+)
LOC103025996 LOC103025996,LOC108411840 coding downstream 105516 22044722 ~ 22050555 (+)
il1rap NA coding downstream 199381 22138587 ~ 22162195 (+)
LOC103022049 NA coding downstream 226193 22165399 ~ 22190308 (+)
dync2h1 dync2h1,LOC108413322,LOC107566891 coding downstream 318952 22258158 ~ 22329193 (+)
G5331 inppl1,LOC108261207,LOC107731861 non-coding upstream 7810 21923120 ~ 21924879 (+)
G5329 NA non-coding upstream 12192 21916582 ~ 21920497 (+)
G5067 arap1,LOC107729594,LOC107557643,LOC107701599 non-coding upstream 263037 21662490 ~ 21669652 (+)
G5069 NA non-coding upstream 273943 21655037 ~ 21658746 (+)
LOC103030556 NA non-coding upstream 663526 21261735 ~ 21269163 (+)
G5371 NA non-coding downstream 187792 22126998 ~ 22129294 (+)
G5379 NA non-coding downstream 229906 22169112 ~ 22197485 (+)
G5382 NA non-coding downstream 253727 22192933 ~ 22193883 (+)
G5416 NA non-coding downstream 275205 22214411 ~ 22215051 (+)
G5455 NA non-coding downstream 404870 22344076 ~ 22345782 (+)
G5026 NA other upstream 933489 20983707 ~ 20999200 (+)
LOC103037169 NA other upstream 1349815 20558523 ~ 20582874 (+)
LOC107197594 NA other upstream 1381054 20549191 ~ 20551635 (+)
G4775 LOC108411134 other upstream 2767058 19160731 ~ 19165631 (+)
G4612 NA other upstream 3172831 18759375 ~ 18759858 (+)
LOC103022859 fgf12,fgf12b,fgf12a,LOC108411839,LOC108278337,LOC107689585,LOC108436038 other downstream 117316 22056522 ~ 22154926 (+)
LOC103043812 gria4a,gria4,LOC107725765,LOC107670112,LOC107689577,LOC107566895,LOC107560842,LOC107756206,LOC107756230 other downstream 468350 22407556 ~ 22524746 (+)
LOC103041654 chordc1,LOC108412466 other downstream 703404 22642610 ~ 22673984 (+)
LOC103045948 grm5b,LOC108411478,LOC107670133,LOC107737424,LOC107731813,LOC107669866 other downstream 769706 22708912 ~ 22758213 (+)
G5620 LOC107694033,LOC107752375,LOC107592755,LOC105030986 other downstream 963560 22902766 ~ 22923081 (+)

Expression


Co-expression Network