G5396


Basic Information

Item Value
gene id G5396
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 22131234 ~ 22200308 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU7239
AGCCGGTGTTCTATCATTTCATCCTACCCATCGAGTGGTCCTACCGAGGCttactgcgcatgcgcacatcatTTTTACGTCAAATGACGATGGTTTTCGGGTACGCCCATAATTTTATCCTACCTGGATATAAGTACGCCATGGAAAAGAAGTGGGAAACAGTATACAATCTTCTGTCTTCGGGATCATACCCATCAGACTTTGACAAATCACAGCGGCAGAACCTTCGGAGATATGCCTCCAATTTTCAGATAAAGGATGGAGATCTGTTTTTTGGGAATCAAAGAAGGGTTATTAAAACCAAAGAAGAAGCCATGTTGCTGTTCCAGGAGTTTCATTCCTCTCCCATGGGTGGACATTCAGGAATCTTAAAAACACGGACAGCCATGTGTTCCAGATTTTACTGGCATGGAATGTCAATCGACATTGACAACTggGTACTGGAATGTGATAAATGCCAGAAAATTGGAAAGCCTTTGACCGCTGCACAACCACTACAGTGCATTAAGgtaaataattgt
>TU7240
AGATACTGGgCCGGTGTTCTATCATTTCATCCTACCCATCGAGTGGTCCTACCGAGGCttactgcgcatgcgcacatcatTTTTACGTCAAATGACGATGGTTTTCGGGTACGCCCATAATTTTATCCTACCTGGATATAAGTACGCCATGGAAAAGAAGTGGGAAACAGTATACAATCTTCTGTCTTCGGGATCATACCCATCAGACTTTGACAAATCACAGCGGCAGAACCTTCGGAGATATGCCTCCAATTTTCAGATAAAGGATGGAGATCTGTTTTTTGGGAATCAAAGAAGGGTTATTAAAACCAAAGAAGAAGCCATGTTGCTGTTCCAGGAGTTTCATTCCTCTCCCATGGGTGGACATTCAGGAATCTTAAAAACACGGACAGCCATGTGTTCCAGATTTTACTGGCATGGAATGTCAATCGACATTGACAACTggGTACTGGAATGTGATAAATGCCAGAAAATTGGAAAGCCTTTGACCGCTGCACAACCACTACAGTGCATTAAGgtaaataattgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU7239 False 521 TUCP 0.43 4 22131234 22135958
TU7240 True 529 TUCP 0.41 5 22131234 22200308

Neighbor

gene id symbol gene type direction distance location
LOC111192513 NA coding downstream 757 22128934 ~ 22130477 (-)
parl parl,LOC107670111,LOC107689587 coding downstream 84256 22036488 ~ 22046978 (-)
stard10 stard10,LOC108278271,LOC106581404 coding downstream 313287 21776231 ~ 21817947 (-)
arap1 arap1 coding downstream 364644 21655023 ~ 21766590 (-)
pde2a pde2a coding downstream 515582 21282296 ~ 21615652 (-)
fzd4 fzd4,LOC107600811,LOC107551868 coding upstream 449 22200757 ~ 22210913 (-)
pdgfd pdgfd coding upstream 143731 22344039 ~ 22366316 (-)
msantd4 msantd4 coding upstream 300790 22501098 ~ 22506707 (-)
gucy1a2 gucy1a2,LOC107706059,LOC107669873 coding upstream 321356 22521664 ~ 22551935 (-)
cwf19l2 cwf19l2 coding upstream 354150 22554458 ~ 22574424 (-)
G5401 NA non-coding downstream 6984 22121889 ~ 22124250 (-)
G5400 NA non-coding downstream 10765 22118260 ~ 22120469 (-)
G5392 NA non-coding downstream 23018 22041654 ~ 22108216 (-)
G5393 NA non-coding downstream 26233 22100401 ~ 22105001 (-)
G5352 NA non-coding downstream 184962 21941517 ~ 21946272 (-)
G5537 lamtor1,LOC106581407 non-coding upstream 273172 22473480 ~ 22603357 (-)
G5541 LOC107756230,LOC107756206,LOC107689577,LOC107670112,LOC107725765 non-coding upstream 291742 22492050 ~ 22496877 (-)
G5570 NA non-coding upstream 437750 22638058 ~ 22641835 (-)
G5568 NA non-coding upstream 448061 22648369 ~ 22649909 (-)
G5658 rab38,LOC103046565,LOC102778643 non-coding upstream 571471 22771779 ~ 22772067 (-)
LOC111192507 NA other downstream 169769 21946786 ~ 21961465 (-)
inppl1 inppl1,inppl1a,LOC108261207 other downstream 190428 21916366 ~ 21940806 (-)
G5095 eif4g1 other downstream 1494166 20630225 ~ 20637068 (-)
LOC111192876 NA other downstream 1638710 20486594 ~ 20492524 (-)
LOC103038464 NA other downstream 2475321 19652786 ~ 19655913 (-)
G5565 NA other upstream 407461 22607769 ~ 22628182 (-)
G5667 c2cd3 other upstream 596037 22796345 ~ 22798290 (-)
LOC103028862 dynll2a,LOC107554284,LOC103397138 other upstream 1134758 23335066 ~ 23339735 (-)
srsf1 srsf1a,srsf1b,LOC103029385,LOC108415197,LOC107587230,LOC107704814,LOC108278759,LOC108278234 other upstream 1144188 23344496 ~ 23351222 (-)
LOC103033507 fam222bb,LOC107661104 other upstream 1348416 23548724 ~ 23560500 (-)

Expression


Co-expression Network