G5401


Basic Information

Item Value
gene id G5401
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 22121889 ~ 22124250 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU7246
ttcacTGCTACTGCTTCTAAATGGATTGCCTGTGACTGATGCAACAAGTGGTTCCACCATTCATGTGTCGGAAACTCACCTGAAGAGGAGGAGTTCCTTTGCCCTTTGTGCAAGATATAAGACAGCCCCTACCAACTAACTCATCCGCTGACCCTGCTTTTAAATGTCATTGCTACCACTGTTTTCCAACAACTCTAATCAgacttctttttcattttatgttaaaaaaaaacacaccttaaAGATGTATGTTATAACTTTATTGTAGACTTTGTCACCTGaggttgtttattttttaaagacaatacCTTTTATAGTTTCCATCAATTACAGTTTGCCAATTCAACTATTTATTTTGACACAGCACATGCTAACCCTCAC
>TU7247
GCATGACGTATTTTTGGGGGCGGAGTTGTGGGAAGGCTGTTGTCGTAAGGGGAGGGACTTGAATAGGGTCAAGGAGCATGCGCAGAGAGGAACCCGCACAATTCAAAAGGCCGGTGTGAATCTGCTGCCGAAAAAAGAAACCGCTGGAGCAAGAAAGATTGCCTGTGACTGATGCAACAAGTGGTTCCACCATTCATGTGTCGGAAACTCACCTGAAGAGGAGGAGTTCCTTTGCCCTTTGTGCAAGATATAAGACAGCCCCTACCAACTAACTCATCCGCTGACCCTGCTTTTAAATGTCATTGCTACCACTGTTTTCCAACAACTCTAATCAgacttctttttcattttatgttaaaaaaaaacacaccttaaAGATGTATGTTATAACTTTATTGTAGACTTTGTCACCTGaggttgtttattttttaaagacaatacCTTTTATAGTTTCCATCAATTACAGTTTGCCAATTCAACTATTTATTTTGACACAGCACATGCTAACCCTCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU7246 False 381 lncRNA 0.35 2 22121889 22122413
TU7247 True 514 lncRNA 0.45 2 22121889 22124250

Neighbor

gene id symbol gene type direction distance location
parl parl,LOC107670111,LOC107689587 coding downstream 74911 22036488 ~ 22046978 (-)
stard10 stard10,LOC108278271,LOC106581404 coding downstream 303942 21776231 ~ 21817947 (-)
arap1 arap1 coding downstream 355299 21655023 ~ 21766590 (-)
pde2a pde2a coding downstream 506237 21282296 ~ 21615652 (-)
LOC103031705 NA coding downstream 1153801 20954003 ~ 20968088 (-)
LOC111192513 NA coding upstream 4684 22128934 ~ 22130477 (-)
fzd4 fzd4,LOC107600811,LOC107551868 coding upstream 76507 22200757 ~ 22210913 (-)
pdgfd pdgfd coding upstream 219789 22344039 ~ 22366316 (-)
msantd4 msantd4 coding upstream 376848 22501098 ~ 22506707 (-)
gucy1a2 gucy1a2,LOC107706059,LOC107669873 coding upstream 397414 22521664 ~ 22551935 (-)
G5400 NA non-coding downstream 1420 22118260 ~ 22120469 (-)
G5392 NA non-coding downstream 13673 22041654 ~ 22108216 (-)
G5393 NA non-coding downstream 16888 22100401 ~ 22105001 (-)
G5352 NA non-coding downstream 175617 21941517 ~ 21946272 (-)
G5346 NA non-coding downstream 229658 21889645 ~ 21892231 (-)
G5414 NA non-coding upstream 68767 22193017 ~ 22193934 (-)
G5537 lamtor1,LOC106581407 non-coding upstream 349230 22473480 ~ 22603357 (-)
G5541 LOC107756230,LOC107756206,LOC107689577,LOC107670112,LOC107725765 non-coding upstream 367800 22492050 ~ 22496877 (-)
G5570 NA non-coding upstream 513808 22638058 ~ 22641835 (-)
G5568 NA non-coding upstream 524119 22648369 ~ 22649909 (-)
LOC111192507 NA other downstream 160424 21946786 ~ 21961465 (-)
inppl1 inppl1,inppl1a,LOC108261207 other downstream 181083 21916366 ~ 21940806 (-)
G5095 eif4g1 other downstream 1484821 20630225 ~ 20637068 (-)
LOC111192876 NA other downstream 1629365 20486594 ~ 20492524 (-)
LOC103038464 NA other downstream 2465976 19652786 ~ 19655913 (-)
G5396 NA other upstream 6984 22131234 ~ 22200308 (-)
G5407 NA other upstream 31535 22155785 ~ 22158185 (-)
G5565 NA other upstream 483519 22607769 ~ 22628182 (-)
G5667 c2cd3 other upstream 672095 22796345 ~ 22798290 (-)
LOC103028862 dynll2a,LOC107554284,LOC103397138 other upstream 1210816 23335066 ~ 23339735 (-)

Expression


Co-expression Network