G5620 (LOC107694033,LOC107752375,LOC107592755,LOC105030986)


Basic Information

Item Value
gene id G5620
gene name LOC107694033,LOC107752375,LOC107592755,LOC105030986
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 22902766 ~ 22923081 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU7587
agtgTCTTCAGGCTGGTGATGTTGCCAGTGCTGTGGTTTATGCTCTGAGTTCTCCTCCACATGTTCAGatTGGAGATATACAGATGAGGCCTGTGGAACAGGTGGATTAATAGACAGAAGAGATCTGGCCCTCTGACTGTGGAATCTCTTTGCTGTACAGATGACTGGGATagaatatatttctttatatgaATCCAGTTTGGTTTGGGATTACCATATAAAATAAACGCTTCCTGTGTGATTTCAGTagtattaataattagtagGAAGTTGTAAATGATGATGAGCTCGAGAGATAAGAATCCTGTAGATCATATGGAATGAGGTTAAATAAGGCTTACATGGCTTTTCTGGGACGAGTTCATTAATCTTCattgaaatatttttgtatgtCAATTTTATGAAAGATGCAAACAAACTGAGTGAGAGATCCTTTATCATGCAGTTTTAATGACCCTAAAACACACTGTGAAAACTGCAAAGGAGTTCAACAGTGGGAAGAAGTGGAAGGATTTAGATTGACCTTGTCAGTCTCCAGGCTTAAACCCAATAGAGCATGCATTTTGCCTGATAACAAACATTTACTGCATCAAGATGAATGCAGAAGGttagtgatgtcagtgggtcacAGGCTTTATGCAGCAAACATTTGCAAAAAGTATTATTcactttaatttgctttaagtttatctgttccaataAATTTTCTCACAAGACAGAAGGTGCtgtcttctgaactgtgtatcagatccagaaataaaagctgaaatgttgaccTTTTGTTtcataattcatattttaatgtcaaacccaaatgtttttagttgacagcagaaataaatggaTCCACTTGACTGTTCCAATACTTGTGGAGGAGATTTTGATTCTAAATTTAAAGGTGGCATACAAGTTGACTATTATTTCAAGCTTTTTCCATGAAAACTgacttaattatatatttttataatcattatatcatTATGATGCTGTTTCATTGAAATGTACAAA
>TU7588
GGCTGTTTATCAGTTCAGTGACTGAGGAGAGAGATTGTGTTTCTGTGCTTCAGCTCGGAGCTCCTCTCCTCCACTACTCCTGAGTTCTGTGGAGGTATTTTGTGGAGGTGTGTGAGGGAGTTTGTGTGATGGAGCGCTGGAAGGGCAGGGTAGCTCTGGTCTCTGGAGCCTCGGTGGGGATCGGAGCTGCTGTGGTGAAGGAGCTCGTTCAACACGGTATGAAGGTGGTGGGCTGCGCCAGGAGCGTGGACAAGATAGAGAAACTGGCAGCAGAATGCGCTCGATCCGGATTCAGCGGAACTCTGATTCCATACAAGTGTGATCTGTCTGTGGAGGAGGAGATTATAAACATGTTctctgcaatcaaatcctcacaccaGGGCGTCGATGTGTTAATCAATAATGCTGGATTAGCTCTACCAGAACCTTTACTGACTGGAAGAACCAGCAGCTGGAGAACCATGATTGATGTGAATGTAATAGCTCTGTCAGTCTGCACTCGTGAAGCGTATCAGTccatgaaagagagaaatgtgGATGATGG
>TU7589
GGCTGTTTATCAGTTCAGTGACTGAGGAGAGAGATTGTGTTTCTGTGCTTCAGCTCGGAGCTCCTCTCCTCCACTACTCCTGAGTTCTGTGGAGGTATTTTGTGGAGGTGTGTGAGGGTGTGAGGGAGTTCGTGTGATGGAGCGCTGGAAGGGCAGGGTAGCTCTGGTCTCTGGAGCCTCGGTGGGGATCGGAGCTGCTGTAGTGAAGGAGCTCGTTCAGCACGGTATGAAGGTGGTGGGCTGCGCCAGGAGCGTGGACAAGATAGAGAAACTGGCAGCAGAATGCGCTCGATCCGGATTCAGCGGAACTCTGATTCCATACAAGTGTGATCTGTCTGTGGAGGAGGAGATTATAAACATGTTctctgcaatcaaatcctcacaccaGGGCGTCGATGTGTTAATCAATAATGCTGGATTAGCTCTACCAGAACCTTTACTGACTGGAAGAACCAGCAGCTGGAGAACCATGATTGATGTGAATGTAATAGCTCTGTCAGTCTGCACTCGTGAAGCGTATCAGTccatgaaagagagaaatgtgGATGATGG
>TU7592
agtgTCTTCAGGCTGGTGATGTTGCCAGTGCTGTGGTTTATGCTCTGAGTTCTCCTCCACATGTTCAGatTGGAGATATACAGATGAGGCCTGTGGAACAGGTGGATTAATAGACAGAAGAGATCTGGCCCTCTGACTGTGGAATCTCTTTGCTGTACAGATGACTGGGATagaatatatttctttatatgaATCCAGTTTGGTTTGGGATTACCATATAAAATAAACGCTTCCTGTGTGATTTCAGTagtattaataattagtagGAAGTTGTAAATGATGATGAGCTCGAGAGATAAGAATCCTGTAGATCATATGGAATGAGGTTAAATAAGGCTTACATGGCTTTTCTGGGACGAGTTCATTAATCTTCattgaaatatttttgtatgtCAATTTTATGAAAGATGCAAACAAACTGAGTGAGAGATCCTTTATCATGCAGTTTTAATGACCCTAAAACACACTGTGAAAACTGCAAAGGAGTTCAACAGTGGGAAGAAGTGGAAGGATTTAGATTGACCTTGTCAGTCTCCAGGCTTAAACCCAATAGAGCATGCATTTTGCCTGATAACAAACATTTACTGCATCAAGATGAATGCAGAAGGttagtgatgtcagtgggtcacAGGCTTTATGCAGCAAACATTTGCAAAAAGTATTATTcactttaatttgctttaagtttatctgttccaataAATTTTCTCACAAGACAGAAGGTGCtgtcttctgaactgtgtatcagatccagaaataaaagctgaaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU7587 True 1008 lncRNA 0.42 2 22902766 22918073
TU7588 False 544 TUCP 0.46 4 22911023 22923081
TU7589 False 552 TUCP 0.46 4 22911023 22923081
TU7592 False 770 lncRNA 0.42 2 22902766 22917835

Neighbor

gene id symbol gene type direction distance location
LOC103022249 NA coding upstream 9667 22880837 ~ 22893099 (+)
LOC103021718 LOC108410847,LOC107758659,LOC107582611,LOC107592752,LOC107752380 coding upstream 35716 22862378 ~ 22867050 (+)
LOC103047689 NA coding upstream 64339 22835801 ~ 22838427 (+)
LOC103047173 LOC108410854,LOC107582651 coding upstream 72688 22812700 ~ 22830078 (+)
c2cd3 NA coding upstream 90150 22785074 ~ 22812616 (+)
LOC103023064 zgc:174895,LOC103023064,LOC107672400,LOC107657114,LOC107752376,LOC105911024,LOC108278204,LOC106612798,LOC108443501 coding downstream 17648 22940729 ~ 22946604 (+)
nek8 nek8,LOC107672375,LOC107758702,LOC107592757,LOC107661116 coding downstream 52439 22975520 ~ 22998282 (+)
traf4 traf4,traf4a,LOC108443497,LOC107758738,LOC107727926 coding downstream 78770 23001851 ~ 23064522 (+)
tada2a tada2a,LOC107661114,LOC107755391 coding downstream 235433 23158514 ~ 23177559 (+)
dusp14 dusp14 coding downstream 268009 23191090 ~ 23202017 (+)
G5619 NA non-coding upstream 78700 22822871 ~ 22824066 (+)
G5595 NA non-coding upstream 194997 22707113 ~ 22707769 (+)
G5455 NA non-coding upstream 556984 22344076 ~ 22345782 (+)
G5416 NA non-coding upstream 687715 22214411 ~ 22215051 (+)
G5379 NA non-coding upstream 705281 22169112 ~ 22197485 (+)
G5640 rab34a,LOC103022556,LOC108443499,LOC107758713,LOC107672399,LOC107657101 non-coding downstream 26746 22949827 ~ 22951675 (+)
G5642 LOC108443500 non-coding downstream 32979 22956060 ~ 22958499 (+)
LOC111192542 NA non-coding downstream 44910 22967991 ~ 22974947 (+)
G5657 NA non-coding downstream 103061 23026142 ~ 23026556 (+)
G5736 NA non-coding downstream 154076 23077157 ~ 23077356 (+)
LOC103045948 grm5b,LOC108411478,LOC107670133,LOC107737424,LOC107731813,LOC107669866 other upstream 144553 22708912 ~ 22758213 (+)
LOC103041654 chordc1,LOC108412466 other upstream 228782 22642610 ~ 22673984 (+)
LOC103043812 gria4a,gria4,LOC107725765,LOC107670112,LOC107689577,LOC107566895,LOC107560842,LOC107756206,LOC107756230 other upstream 378020 22407556 ~ 22524746 (+)
LOC103022859 fgf12,fgf12b,fgf12a,LOC108411839,LOC108278337,LOC107689585,LOC108436038 other upstream 747840 22056522 ~ 22154926 (+)
G5026 NA other upstream 1903566 20983707 ~ 20999200 (+)
G5646 NA other downstream 40979 22964060 ~ 22964924 (+)
LOC103024639 NA other downstream 158310 23081391 ~ 23156366 (+)
G5797 srsf1a,srsf1b,LOC103029385,LOC108415197,LOC107587230,LOC107704814,LOC108278759,LOC108278234,LOC107661749 other downstream 389431 23312512 ~ 23351306 (+)
G5871 NA other downstream 909155 23832236 ~ 23833830 (+)
LOC103035426 NA other downstream 916912 23839993 ~ 23847367 (+)

Expression


Co-expression Network